3300029327: Anode biofilm microbial communities from glucose-fed MFC - GM-anode biofilm

Overview

Basic Information

• IMG/M Taxon OID: 3300029327
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133115 | Gp0282670 | Ga0243509
• Sample Name: Anode biofilm microbial communities from glucose-fed MFC - GM-anode biofilm
• Sequencing Status: Permanent Draft
• Sequencing Center: Tokyo University of Pharmacy and Life Sciences
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 146280189
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Syntrophobacter → Syntrophobacter fumaroxidans	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Electrode-Associated Soil And Biofilms Microbial Communities From Mfcs In Japan
• Type: Engineered
• Taxonomy: Engineered → Industrial Production → Engineered Product → Bioanode → Unclassified → Anode Biofilm → Electrode-Associated Soil And Biofilms Microbial Communities From Mfcs In Japan

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Japan: Tokyo
• Coordinates
  • Lat. (^o): 35.638
  • Long. (^o): 139.3817
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003085	Metagenome / Metatranscriptome	508	Y
F008527	Metagenome	332	Y
F021619	Metagenome / Metatranscriptome	218	Y
F038735	Metagenome / Metatranscriptome	165	Y
F051329	Metagenome / Metatranscriptome	144	Y
F051648	Metagenome / Metatranscriptome	143	Y
F056624	Metagenome	137	Y
F056715	Metagenome / Metatranscriptome	137	Y
F057843	Metagenome / Metatranscriptome	135	Y
F086025	Metagenome	111	Y
F089117	Metagenome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243509_100038	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	185321
Ga0243509_100199	All Organisms → cellular organisms → Bacteria → Proteobacteria	60921
Ga0243509_100370	All Organisms → cellular organisms → Bacteria	38615
Ga0243509_100455	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	34131
Ga0243509_100909	All Organisms → cellular organisms → Bacteria	20619
Ga0243509_101614	All Organisms → cellular organisms → Bacteria	13051
Ga0243509_101924	All Organisms → cellular organisms → Bacteria	11213
Ga0243509_102560	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	8685
Ga0243509_104657	All Organisms → cellular organisms → Bacteria	4897
Ga0243509_105438	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Syntrophobacter → Syntrophobacter fumaroxidans	4155
Ga0243509_122516	Not Available	935

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243509_100038	Ga0243509_100038172	F056624	MTVSHEEFDNLANHCQTCRDETRDKLAAFDRRLLALEIIVRGEDGRNGIKSQINTLCLRFDAFEKKAIRWIAVGTALPGIVVGVLGVLKFIGKL
Ga0243509_100199	Ga0243509_10019918	F057843	VGFIYKNHLLRSKSVQLSERDRWTLEVTVVRNYGSEGATEQTFSSEKTFHSKEIADMEGIMFARKIIDGEINGLSIEDR
Ga0243509_100370	Ga0243509_10037014	F008527	MKTLPKMEISDDLDAQINQGMNVSDLCKADVIRQALRIGLPQFAARFQPPPLWLEERIREALAEPAEAISKGQFEKNMAAIADGR
Ga0243509_100455	Ga0243509_1004551	F051648	MTAGIGTGQLAELVKQVQAGNKVLLTQGNKPVAKIVPAPQETAQSTDLRIRSLRGLRILTPVISQADIAEEMFRRE
Ga0243509_100909	Ga0243509_10090912	F086025	MQAEYEMKVQVIRSKGRAARLFVNIPMPLAAALDIQAGERIRWQLLGRSDLRLVRLEAPSPAQGLKK
Ga0243509_101614	Ga0243509_10161412	F089117	MNKXXXXIGFQLIVYSLLLAGLSYLVHHLAPDLAQTTLVTGLVGGALCLVWGVRAAAGSESKALPILTLIPVSFVMLSQTVIVWTGGSEVVTGRRSAAVVLTVLLALSVGMLMRVAYAGLVFDGQPASAVRGVGAKPGTTGKGAA
Ga0243509_101924	Ga0243509_1019242	F003085	MYNGGKQISSDNRTESRQHDTPGRQQTYLQYGEQIGHHRGLRMRHVGKRVTRELGRASRFLGSTSRKKGDRHNQHPGVYRTTSPMDEPTPVRTGRNTKNASHQGTGRERKADRPGRTEAVVATHSTAGQGATSARKRGEPRPKGPTITLTGAREGNAGHDVCAKERQEGL
Ga0243509_102560	Ga0243509_1025604	F051329	MQVPKRSPRQEYRLKQRERIDAAPVIAKKFPRLKALKVTLEYFDATGSTKQGEMKCKLNVDHAKSVLWFACPGVECSCGDFDLSEALVKAVRGGLKVATGELHCQGTRQRGDREPVVCRTLLRYKLNLNYD
Ga0243509_104657	Ga0243509_1046576	F021619	MREELLIDLRRTQLLAVDTSLDDARRALARAARIPTAFAAELRAVLAVVAELERRVLADAES
Ga0243509_105438	Ga0243509_1054385	F038735	MKVFIDSMLGYWILLLAISLGVAAMIYQLWLRNVL
Ga0243509_122516	Ga0243509_1225161	F056715	MQEFRRVRGAIDSLIDGTKESIKQKSPSEAMQQLEQARGLIQELKQMSTAEQAAIVAKRETTIADLAEIAGNLKXXXXXRAKETLGQAATL