3300029325: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 016_6_7_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029325
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133095 | Gp0281960 | Ga0242844
• Sample Name: Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 016_6_7_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 132976095
• Sequencing Scaffolds: 7
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050794	Metagenome	145	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F062845	Metagenome	130	N
F064725	Metagenome	128	N
F070093	Metagenome	123	N
F077313	Metagenome	117	N
F080673	Metagenome	115	N
F089590	Metagenome	109	N
F089592	Metagenome	109	N
F093883	Metagenome	106	N
F099451	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0242844_100531	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	43611
Ga0242844_100676	Not Available	34064
Ga0242844_100912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	23481
Ga0242844_100943	Not Available	22398
Ga0242844_101738	Not Available	10074
Ga0242844_107083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1988
Ga0242844_127632	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae	646

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0242844_100531	Ga0242844_10053187	F080673	MKLQDEALLYLRDNITREEAYYILTTENEMTEVLIAKKEDGGKRIKILDMEYTIEKDDMLFLFDTDGVIDECLLVASYIGVNMYFRRQDVNAILNNINREKVLKYPYIAIQLDNIQTVEKRRVVFEITGHRMDDNKERIDFMFVYFMARLCV
Ga0242844_100531	Ga0242844_10053193	F057001	MTSKDLNKVQNEVKKASEKTLAGAVKAWCQLFKSGKEVNEILKDNDIKVDKAIVPALVALAKEKEMVIQLCKEILPRVNDTFCAYKEVEREYYDKQDQANNSKLPLDKINNIAVFGNTHKRFGYCEPVAYSDTDSAPYYEVFNGSDKRIVKVAIPIKRYTYNLIAKCITYYLTHPKNDR
Ga0242844_100676	Ga0242844_10067613	F077313	MGKYVIKRKIPKYQEAGEVTPIMPGNVVGLQGIGVEPLVSSTRIGFDIQHPDINTIDTSDLNAIVDSNKKVDESGSTDVFDFTAIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRQQSQMRYKNGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVEQSGEAPMEAMGQKHADGGTPVSLEQGTEVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKVKIGLKSVYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDLANVIYKEQEDRKMKKDEDTYFAKGGEIDNIIFRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGINTDERLNYYKTFNPVAYDAYMGASEGARARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEEPDVKLDMPELIDPNTLPKTNTNAGKSNSGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGRYINEVEQGNVAQRTWADNVNARTWTDTYDKNIAQRQGYQSRILQALANTDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
Ga0242844_100676	Ga0242844_10067616	F050794	MAPVGTLYIMQLDSFLHRKIMQDLRIQRVKVLMMLYTSHYFVNNRQRQLLDHTYALSRSQAFDYMTEFNERLSDKIGIECTMDILLPTDDDNANIIIEYNGIIKKLMREAEKLELDTDAIKDMMRDLLNELKDDVDLNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYSYISSR
Ga0242844_100676	Ga0242844_1006762	F064725	MIQLAREGRLDFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNIMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLVQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYDYLINKTTIL
Ga0242844_100912	Ga0242844_10091210	F062845	MKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNAASSSSCA
Ga0242844_100943	Ga0242844_10094313	F093883	MEEDKDIKKEIRDYLKEEADTHIRHWMAIKRESKRLYSEIEDRTKKIALKSSSLIKEEDFVSLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDFDTTYASTAKSIMEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKEMKVNATGKTKAD
Ga0242844_100943	Ga0242844_10094320	F089592	MKEILKSKKVLVEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNXXXXVKQRVDNIMKPFEEMSQMDLSQTNLEFWDDAKDKIFMGKVYNTANTVDLFYLYLAVFSGMLTPQEMDGDPVFMNSMFCFVEKDNMKDFVQQREINKMNISYKFISALKKGGDDRQAVIDLLLYIGIVTRPDFTEDEYYTGSLSNWMNEKKTNVDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDVRTSAEFLATKKDFINIKANVLDEYEEIMSMSNIDDKSKTKKVKDIKKKDDVEEGDKIKEE
Ga0242844_100943	Ga0242844_1009437	F058555	METKIVLLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVVAYLTIINVQKHVFLRNRMRDGYRDRIEINTDDFIDILSDGIAYFCYRHVIENCHEDIDYQLKTLKAYAEGEIRIALSDIMIYSYKAKKNEDTKEIFVGKKRSVYKCLDKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTIKFNVAYLLNELNKNLIGIGMQEISQSTIYRYISMFLDMCKKSISDLYEEVVKNNGVVNTKDNNNVTIGHIRASYKGSVLYILISTDYIINVFLGKKSAEMSKXXXXKFNIYILFTFISIS
Ga0242844_101738	Ga0242844_1017389	F089590	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWLREVRLTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDTFADAYLVKVFKAVFKRINVFKMFGFSKNIPDEMFDDIKKIADDKVKDKS
Ga0242844_107083	Ga0242844_1070833	F070093	ICRVSNFESLLLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNPN
Ga0242844_127632	Ga0242844_1276322	F099451	MEIKNVGQLRKIIENLSDDFEIEMRIRRKLTDEELKNCRYPYPYDTEYLTLEFDDIGVSNKVLCLGVTSNE