3300029257: Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002658-45

Overview

Basic Information

• IMG/M Taxon OID: 3300029257
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0192940 | Ga0168675
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002658-45
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 158822783
• Sequencing Scaffolds: 21
• Novel Protein Genes: 24
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	9
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides xylanisolvens	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F039147	Metagenome	164	N
F042910	Metagenome	157	N
F043413	Metagenome	156	N
F043945	Metagenome	155	N
F044554	Metagenome	154	N
F047125	Metagenome / Metatranscriptome	150	N
F047126	Metagenome	150	N
F050793	Metagenome	145	N
F051934	Metagenome	143	N
F051936	Metagenome	143	N
F055739	Metagenome	138	N
F056623	Metagenome	137	N
F067720	Metagenome	125	Y
F070133	Metagenome	123	N
F071325	Metagenome	122	N
F077319	Metagenome	117	N
F077320	Metagenome	117	N
F082714	Metagenome	113	N
F082715	Metagenome / Metatranscriptome	113	N
F087213	Metagenome	110	N
F088914	Metagenome	109	N
F088920	Metagenome	109	Y
F095494	Metagenome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168675_100082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	154431
Ga0168675_100119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	127077
Ga0168675_100183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	103376
Ga0168675_100385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	66136
Ga0168675_100390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	65083
Ga0168675_100450	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	58603
Ga0168675_100622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	45221
Ga0168675_100846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	34468
Ga0168675_100919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	31643
Ga0168675_100953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	30639
Ga0168675_101158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	25017
Ga0168675_101181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	24453
Ga0168675_101321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	21391
Ga0168675_101342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	20993
Ga0168675_101551	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	17709
Ga0168675_102116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	12256
Ga0168675_102897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	8483
Ga0168675_104315	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides xylanisolvens	5183
Ga0168675_104363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5109
Ga0168675_105634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3750
Ga0168675_125682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	605

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168675_100082	Ga0168675_10008279	F095494	VSDPKEKEVQAILQAIDYGHLPPRETQRRLLNIIQAEAARTDAPTDETKIHTCMDLLERLQGEQKPIAPARVDALRQHIAAAHQKNERKRQKRKKIIAAAACSAAAIAVAFAVSHPLLWYENWTTSDEQQHFVTSHEIAIEMLETAVADPMLPTDDTVEVQSIAALDALIGRKTGIPEMVNGQWELQHRYVNFTRSGISISLMYVNAADAQQTIVGVINLISNPQYMMLSFEQSYEGTIQQFDGLNFYITENINKPVALWQGDDKLLLFSGRTSQEEVTSLLRTIIREMGE
Ga0168675_100119	Ga0168675_100119105	F077319	MQENTVCAANCTVQEKRGGQKIMLIRNATLQMSATERACMDVRVMNGCVWEMGAALVKGLYESETDLCGDVLMPGRMLETPVPAADEKTLRLLCRRLYREGVRYFMADCPADALLRVQNRPERRGALPVTALPNPEPLRSGTGMPLTRWTAAGEFVGMMDEHSGD
Ga0168675_100119	Ga0168675_10011993	F082715	MMKFMKRVLSLLISAMLLGCFALAEEAPLLPIAIVSYDLTDEATTAALSALIEPKENALTRWERVVLSDGREAWVICQFDQTTMSNAWSRVIDAETQEVLQEDTTDTGFFATAQARWESAKGIYALWSIQDKMLFDRLYAMAPCYGEPVEGDLTQEEALAAALNVTGLTAADYDAVGYGYIMGSSEQNGTWQVFFVKGNEVVSTVNLDARDATILLVEPDEEGNG
Ga0168675_100183	Ga0168675_10018385	F055739	MTEQQLREKLQFAYGNMPDATRAAFEHSLTHHRAPETHRNIGLSRTMRIVITAVLMALMLTAVGVAAARFFSVTDVHPAQDGTEGDYQAHYLALEERYDSDLLSVSVNDAVYDGSVLAFTMEMAAKTDDVLAVEVRICGECDGKMYRFDPLDVYGGEFQSLLMLPDLGGTFDGEKYAAEGILLDENGQMPPEGKPIAWTIEIDVLKAVWQTETMPDDLYEALSEEDDVAQYIREQAARHIITLTDAGVEDYLLEMCGAGWDEIEQMSKADLLLRCGGFERAETYTVAFATEGNTQYVHPELSGLRIPLDGYTAVVDYVRASFLGGCVVLHCEAPNGTALPNGTALPDVWRVYRNDEQNPAGEAGWARASGYAGVPVGVVDVNQPSICLYFAPCADLTSLRIVPEGEAGFTLNLSGEKGTE
Ga0168675_100183	Ga0168675_10018387	F043413	MTERELREKLQSAYGTMPDATRAAFEHSLTHHRVETRNPVRMSRRMRTIVTLALMLMMLTAVGVAAAKLASVTDYPPPSGLTPEYMSHLVTLNEAYDGDLLTLSVNDLVFDGTTVEVAMNVQPKAGKQVFMDMEVTAECAGRAYTLEIEGCGGGDFMSGMFLPDETGSWSDSPFGFDGVLWDDDMQSPPEGVPIAWTMTFELLQPVWEVEYLPDAQYQALLAGGADTLEAYVQNNWRQHIITVTYGSLVEYQYAAEAAMLADGTITEPLSGSRTEQLLSCGGFRRADTIIVQFTTDFADDYAHPELVGKRIGMGDYDLVIDNVNLSFMRANITMHYEFSAAYTEDEIRQMTNLPNAWRVYVNGETDSGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGERWDACHPDAEKGFTLELQE
Ga0168675_100385	Ga0168675_10038532	F082714	VDVDFLVREYWVCTFGNGFPERRFTAQEMRRAVDALTPDEHAELFTIYALPHDAPGTPPSSCEDFCARGFTMAFYAYDGDGYALLAQSEEQVEAAFEALTTAGLCEKVEEVEKETLAHWG
Ga0168675_100390	Ga0168675_10039021	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPDTPKENRKNPGKFIVFSAWYAAKALEMDVK
Ga0168675_100450	Ga0168675_10045028	F067720	MASITYEHFVDVNKMYAAQEQFRHVTKMVCARLRGLTKTYHLGNVNKLVTFCHRFAVLGNMVRNAGELPQPFWLGAACGGGSHSLSASVARA
Ga0168675_100622	Ga0168675_10062218	F043945	MKHNLRMAFLSLLLVLTLGVMPVFAESTDHAMDWTHGIGSRYRTDVTSALPFEDELFFISGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLDGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVAELDYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAENGLYVIAKDKTDEYQIVRFDVDTGKGEMMEFALEDEEDSHLMPDMPGFFRWSAESSKYERVLYDGKVLTMVNLPNGEATSVVHNLVNTLTLQPIQDYDVTLGDYVTHDAYYAYAPNKDNTAMYFVHDNTVWVMEYDEENSQFSEPRGIDKLPFFAEDTMCGFYWRGFYLIQTHDGLYLCHTGDATARAYLYGEVE
Ga0168675_100846	Ga0168675_10084615	F042910	LADRLYCALNGTTLHDLDARIHLLDVEELAPAVRTVTASRIGGGLHLLRRQREQLSLRVRFLIEEYDIAARHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDTAITTLTISAAGKISFQGLTLAPGAAVRIHHDAGVFAAEMVSDDSTVSILPYRTPDSADDLLLRPGVLNEIRVEAGSAAFVSGRCKGRYC
Ga0168675_100919	Ga0168675_10091918	F050793	MRKYEVDVPENVEMADIHAIQTRVKKHNLLTVALLIPLFAGYALRESSETLGGIVFVLSIALMVLGFISGRGDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSGYRVQLDVLNEKTGAWENDEQDEVFPTLADVREYATQEGYEPMDVDFGQMTDEEFQQFLDRSRI
Ga0168675_100953	Ga0168675_10095322	F051934	MGLMRRLAAAALAAVLVLSTALGERVTFRLSADIDPVQYPAQERKLAQGLKSLFRLLTVEGDVVASDGSFDARIDLGLTNAPEKTATRIRFFGLDSHWGIQATDLGGETLMVNQLAWLEFAIKAYNHLDLPLQRVFLWLSPYAHTSAWAGVRQAIADLTAQENDGRLENTALIACAEEIARLSEDDRALYYYIEAFGLESGADANIFDALATLPEYVEANFPDGLSIEHTENGVSWQNGEETVFSYADADGTQVVSLHFPDLVDFSATLRRDALLFTGALSLQSDVLNADASFSLPASYPVTLPFYAQIDADGMIAGDDGIHLASEGEAQGDTITIRRIQPDHSATMMTLTVKVIQVAEGTVKYAPEDVQGTNVLSVDGPALAELMGRIGKPMVRKVTQWLAALPAELVQGAMDAMEDSGLLGTLTDAILNGEAGEY
Ga0168675_101158	Ga0168675_1011588	F044554	VLAGRFIPVLCASIARLFPCRTEIARCFTLDFAISRYLFLSFPFFFRANFAQALFSSLLFVSNTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0168675_101181	Ga0168675_10118123	F070133	MKRLLGLLLAVMVMMGGMAGAQASTDNASMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEQIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHAGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLMIYDWSFCACSDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNENVRDAACIGQTAYMRIRLTNEKSEILLYDITQQKITDSQTLLAVDDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQADITTIEMDEKSHSYFVCSYSISAGE
Ga0168675_101181	Ga0168675_1011819	F039147	MRARRLLIPLMMLLLLLPQAQAERLTLYTRPGQVDEATPFQLRPTELSICSVTRAMGGVVVLANDYNYDSLSLYFWQDGMTEMRKLGGGFYWVMSSDTMETAQESCEYSMSRVPNYRMPDLTHAISNLTSDGETLYALNRINGLIFKISETKDGLQTEDVCTMANLSCLNISYRDLETDKVYTYPASLTRMHVCGSVLAISVMQENGIKVVLVDLTDGAIREIAGESLEAMYEWADGELLLWRLEGSTNEISRSSGTYTLSRYSVATGEETLLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEDPVVTFPAANVNIAVTKDSIVGVNLSSVYVRSKENGDMTVLRIQSSNGASNTALQHFAEENPEVILAQETLTKSAMNAASLAARMSASADAPDILRLGLTPDMPEADGSWPLDVLMDKGWCMDLSVYPEVSDYVPRMNEIYRDAVTRDGKIYALPIYAWSYGYFISRNVMEKLGLQESDIPTNLIDLCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVRDWIGYCQAENIPLRFDHPVFREMMAALDAMRTDKIEQANQQVNEEISDYRECLIWTDAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTTNADLVGKMLAQVIADQEATAKCVLLADYDEPIEDSYYLTMVSDYEKTLTELRRQQENAPAWKKQGIQERINEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFNALVSQVHQGEISLEEFVEEADKLIEGLEQ
Ga0168675_101321	Ga0168675_1013216	F088920	LFVKWNPKNHHFIFLFPAFFSFVSANLHHYPAFWAGVILHLILHFSQKVAIFAPKRAFPLFFVPTLFFTGLSVFSPQTSPKISGQTSLH
Ga0168675_101342	Ga0168675_1013426	F087213	MKKFFSLFLAVLLIFSCWTAATAESTDAVSGAPLDNDIEIVYKEHFDDMVTRYADELTEAELLVSADVYDAIGMIRFDSEDSLAARQRIYGIASADDLHAILTGYFDPNDAAYTADAALDARLQAILAACGLNPEDYDISVIRNLSGLPEPITGTNWYCTLIRKGVEVAEDETNPYDMVIVLYGDEMTVGAFVLNPEV
Ga0168675_101551	Ga0168675_1015517	F056623	MKSTEEMLQAAVQQLQTAEQARLTSETDPARRQLLHLLYAREAAALQSMTLIRAEIPATQKRDWKPLILPLAAAVLNLGALALWLTLPNCVTPENSGWMGRFALCIVAQSVSLCAAIGSIVSAMRRKPPKPVVVADETEFRRRLVEAEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLNAVGCEAVDYTPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKG
Ga0168675_102116	Ga0168675_10211613	F071325	LSDSSIIISKVVLFVKHFFDIFLSFPNPFLKAFHLHAVRFPAAFLLVHRFYLDFEELLSCATAYL
Ga0168675_102897	Ga0168675_1028978	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPSGFSGLNTLRAAGVPNPPPPFAQRFIACFCNQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0168675_104315	Ga0168675_1043158	F051936	LRGKAFGFSVLQEHAVMTPVISIFFEILIIRYLSIQISIKK
Ga0168675_104363	Ga0168675_1043636	F077320	MKRKGMRRRRKLVLLAVLLIMVGIAVWRIWQTPRPVVLHRQDAWLSSAEPEMVDTLPDNAFTAELPEEIDGRLSYIRDYSASGYYQIVWEGVSAEAAESYLTALLDKGFTRLMGTAEDIASGVLLARGDLTLSISLSGGTLNMLMTRAEEPTATPLPEWLADW
Ga0168675_105634	Ga0168675_1056342	F047125	MDVALLLMVLGVMLSGFRVADVLDHIRRKIIQQEGKRRSWWS
Ga0168675_125682	Ga0168675_1256822	F026592	LLAANSISCCLRTASPQGIDAQASQGSVAPLMERSDETFSVMQLFSADRE