Sample 3300029239

Overview

Basic Information
IMG/M Taxon OID	3300029239 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127417 \| Gp0192480 \| Ga0168092
Sample Name	Activated sludge microbial communities from sewage treatment plant in Sweden - SWESTP22 - Henriksdal-surplus 129
Sequencing Status	Permanent Draft
Sequencing Center	University of Gothenburg
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	139766754
Sequencing Scaffolds	12
Novel Protein Genes	12
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Haliscomenobacteraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Sewage Microbial Communities From Wastewater Treatment Plant In Sweden
Type	Engineered
Taxonomy	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Sewage Microbial Communities From Wastewater Treatment Plant In Sweden

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Sweden
Coordinates	Lat. (^o)	59.310676	Long. (^o)	18.108437	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F012202	Metagenome	282	Y
F018937	Metagenome	232	Y
F028441	Metagenome / Metatranscriptome	191	Y
F028627	Metagenome	191	Y
F034611	Metagenome / Metatranscriptome	174	Y
F065834	Metagenome / Metatranscriptome	127	Y
F073180	Metagenome / Metatranscriptome	120	Y
F087352	Metagenome / Metatranscriptome	110	Y
F104545	Metagenome / Metatranscriptome	100	N

Family

Category

Number of Sequences

3D Structure?

F012202

Metagenome

282

F018937

Metagenome

232

F028441

Metagenome / Metatranscriptome

191

F028627

Metagenome

191

F034611

Metagenome / Metatranscriptome

174

F065834

Metagenome / Metatranscriptome

127

F073180

Metagenome / Metatranscriptome

120

F087352

Metagenome / Metatranscriptome

110

F104545

Metagenome / Metatranscriptome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0168092_1000142	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	33941	Open in IMG/M
Ga0168092_1000191	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	28914	Open in IMG/M
Ga0168092_1000276	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	23759	Open in IMG/M
Ga0168092_1000336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	21421	Open in IMG/M
Ga0168092_1000707	All Organisms → cellular organisms → Bacteria	14178	Open in IMG/M
Ga0168092_1000936	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	11819	Open in IMG/M
Ga0168092_1002168	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Haliscomenobacteraceae	6768	Open in IMG/M
Ga0168092_1004562	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3903	Open in IMG/M
Ga0168092_1006213	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3099	Open in IMG/M
Ga0168092_1009995	All Organisms → cellular organisms → Bacteria	2193	Open in IMG/M
Ga0168092_1012848	All Organisms → cellular organisms → Bacteria	1833	Open in IMG/M
Ga0168092_1034950	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	869	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0168092_1000142

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

33941

Open in IMG/M

Ga0168092_1000191

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

28914

Open in IMG/M

Ga0168092_1000276

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

23759

Open in IMG/M

Ga0168092_1000336

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria

21421

Open in IMG/M

Ga0168092_1000707

All Organisms → cellular organisms → Bacteria

14178

Open in IMG/M

Ga0168092_1000936

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

11819

Open in IMG/M

Ga0168092_1002168

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Haliscomenobacteraceae

6768

Open in IMG/M

Ga0168092_1004562

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

3903

Open in IMG/M

Ga0168092_1006213

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

3099

Open in IMG/M

Ga0168092_1009995

All Organisms → cellular organisms → Bacteria

2193

Open in IMG/M

Ga0168092_1012848

All Organisms → cellular organisms → Bacteria

1833

Open in IMG/M

Ga0168092_1034950

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

869

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0168092_1000142	Ga0168092_100014229	F028441	MTLKQLIKLENKATEVWVISPTLHYDTNNKDFSELVSVNLGESTKYKYIVPATAQVEKNIQLYKKMYNVTEREIANNFLILPPSEFNPFLAEIAIYNASTDCIACAAPATDDSNEVIVFKKETAKAMAKSFADLWKKYMRSRP
Ga0168092_1000191	Ga0168092_10001917	F028441	MTLKQLIKLENRATEVWVISPTLHYDIENKDFSELVSVNMGESTKYKYIVPATPQVEKNLQLYKKRYNVTEREIANNFLILPVSDFNPFLTEMAIYNASTECIACAAPATDDSNEVIVFKASTAKAMAKSFVDLWKKYMRVHP
Ga0168092_1000276	Ga0168092_10002763	F087352	MVQDYKALLDKNKKLETENKSLAQSLEEALKQQEMLSKRLDSKLQETLRDTKGIDHWKTETRKEIKGIMKEVEKCIPQVESLLEKH
Ga0168092_1000336	Ga0168092_10003363	F104545	MTAKGIRVGKDQPIRTCTTQHARQRIVGQQAGIDCDAATRAVRVPTASGQPDVEPVDTILRHVGRCKTFQDVPASIDRVRQRLEMARMPKTFQHAVIKVAVQKSDR
Ga0168092_1000707	Ga0168092_10007073	F073180	MKQNFTYLQLTRLVYGETTKAETDMLLELAGTVPQIANSLEILTKGKEALGNDRFSPSEMVINRILGYSASSAPVSAS
Ga0168092_1000936	Ga0168092_100093612	F065834	MKTINKIVVALLLIVFLAACNKNYYSGSGKGGKNCGCPSHKGMSGY
Ga0168092_1002168	Ga0168092_10021683	F087352	MYHPNELIQDIQERLDRMVRDYRDIVEKNKKLETENKVLAHSLEEALKLQETLSKRLDTVSQETLRDTKGLDHWKTETRKEIRGIMKEVEKCIPQVESLLENK
Ga0168092_1004562	Ga0168092_10045624	F012202	MEQAYIIARLKEMTTPELLDALAEAYAGKPIDIYEYLPPLLIDKVTDTLWEYIDAVQQIKKSGN
Ga0168092_1006213	Ga0168092_10062134	F034611	MLQNKTILTLTIDLLANGAFNHLKDDEITAMHHLILRLKEPLSQVQQNLLITFWYHADISTLPSSLLYRCNTVLQQHGRYPLEEQLSTEMY
Ga0168092_1009995	Ga0168092_10099952	F073180	MKQEFTQLQLTRLVYGETTKAESDMLLELALTVPQIAETLETLKKGKEALGRDRFSPSDMVINSILGYSASSAPVSAS
Ga0168092_1012848	Ga0168092_10128482	F028627	MSENQADLIPQLKEVLALLAKVDRTYASERKIAIDQLLQKIWDEPALQVEELDFLQDLAGDLPFYEPEERDRDLALGYYDDNKLTELTAAATKTIEGILDQP
Ga0168092_1034950	Ga0168092_10349502	F018937	YVPGQDPGVVASVNVMVTVASHASVAVGGVNTGTAGQSSGVVCATQVIVGGVISLTTMVPLQVAVLPQSSVAVHVLVTV

Scaffold ID

Protein ID

Family

Sequence

Ga0168092_1000142

Ga0168092_100014229

F028441

MTLKQLIKLENKATEVWVISPTLHYDTNNKDFSELVSVNLGESTKYKYIVPATAQVEKNIQLYKKMYNVTEREIANNFLILPPSEFNPFLAEIAIYNASTDCIACAAPATDDSNEVIVFKKETAKAMAKSFADLWKKYMRSRP

Ga0168092_1000191

Ga0168092_10001917

F028441

MTLKQLIKLENRATEVWVISPTLHYDIENKDFSELVSVNMGESTKYKYIVPATPQVEKNLQLYKKRYNVTEREIANNFLILPVSDFNPFLTEMAIYNASTECIACAAPATDDSNEVIVFKASTAKAMAKSFVDLWKKYMRVHP

Ga0168092_1000276

Ga0168092_10002763

F087352

MVQDYKALLDKNKKLETENKSLAQSLEEALKQQEMLSKRLDSKLQETLRDTKGIDHWKTETRKEIKGIMKEVEKCIPQVESLLEKH

Ga0168092_1000336

Ga0168092_10003363

F104545

MTAKGIRVGKDQPIRTCTTQHARQRIVGQQAGIDCDAATRAVRVPTASGQPDVEPVDTILRHVGRCKTFQDVPASIDRVRQRLEMARMPKTFQHAVIKVAVQKSDR

Ga0168092_1000707

Ga0168092_10007073

F073180

MKQNFTYLQLTRLVYGETTKAETDMLLELAGTVPQIANSLEILTKGKEALGNDRFSPSEMVINRILGYSASSAPVSAS

Ga0168092_1000936

Ga0168092_100093612

F065834

MKTINKIVVALLLIVFLAACNKNYYSGSGKGGKNCGCPSHKGMSGY

Ga0168092_1002168

Ga0168092_10021683

F087352

MYHPNELIQDIQERLDRMVRDYRDIVEKNKKLETENKVLAHSLEEALKLQETLSKRLDTVSQETLRDTKGLDHWKTETRKEIRGIMKEVEKCIPQVESLLENK

Ga0168092_1004562

Ga0168092_10045624

F012202

MEQAYIIARLKEMTTPELLDALAEAYAGKPIDIYEYLPPLLIDKVTDTLWEYIDAVQQIKKSGN

Ga0168092_1006213

Ga0168092_10062134

F034611

MLQNKTILTLTIDLLANGAFNHLKDDEITAMHHLILRLKEPLSQVQQNLLITFWYHADISTLPSSLLYRCNTVLQQHGRYPLEEQLSTEMY

Ga0168092_1009995

Ga0168092_10099952

F073180

MKQEFTQLQLTRLVYGETTKAESDMLLELALTVPQIAETLETLKKGKEALGRDRFSPSDMVINSILGYSASSAPVSAS

Ga0168092_1012848

Ga0168092_10128482

F028627

MSENQADLIPQLKEVLALLAKVDRTYASERKIAIDQLLQKIWDEPALQVEELDFLQDLAGDLPFYEPEERDRDLALGYYDDNKLTELTAAATKTIEGILDQP

Ga0168092_1034950

Ga0168092_10349502

F018937

YVPGQDPGVVASVNVMVTVASHASVAVGGVNTGTAGQSSGVVCATQVIVGGVISLTTMVPLQVAVLPQSSVAVHVLVTV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029239: Activated sludge microbial communities from sewage treatment plant in Sweden - SWESTP22 - Henriksdal-surplus 129

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences