3300029236: Human fecal microbial communities from mother in Denmark - 507_M

Overview

Basic Information

• IMG/M Taxon OID: 3300029236
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193715 | Ga0169721
• Sample Name: Human fecal microbial communities from mother in Denmark - 507_M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 179612334
• Sequencing Scaffolds: 13
• Novel Protein Genes: 14
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F032286	Metagenome / Metatranscriptome	180	Y
F044555	Metagenome / Metatranscriptome	154	N
F055775	Metagenome	138	N
F056682	Metagenome	137	Y
F068811	Metagenome	124	N
F070093	Metagenome	123	N
F078004	Metagenome	117	N
F078693	Metagenome	116	N
F081354	Metagenome	114	Y
F088920	Metagenome	109	Y
F089005	Metagenome	109	N
F090514	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169721_101285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	21546
Ga0169721_101556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	18893
Ga0169721_101672	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae	17679
Ga0169721_101728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	17271
Ga0169721_101761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	16973
Ga0169721_101790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	16712
Ga0169721_102474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12731
Ga0169721_102595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	12125
Ga0169721_103741	All Organisms → cellular organisms → Bacteria	8531
Ga0169721_106850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	4515
Ga0169721_112973	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2179
Ga0169721_120028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1332
Ga0169721_141757	Not Available	594

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169721_101285	Ga0169721_1012858	F026489	LVLWAHAEGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKI
Ga0169721_101556	Ga0169721_10155610	F056682	MKMQSRAGKVANQSIRQGEIYSASFGAFPSKNRSTFPIQELGKIYENQEVL
Ga0169721_101672	Ga0169721_10167213	F055775	MAQIAQQDNLVIEVTTTAAALDDDTKKKLIECIKGGTITDVILVTKEAEKKINHARVVSWLVDTTKNSPKYTIGIININSGEVEVITLN
Ga0169721_101728	Ga0169721_1017286	F090514	MNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADILPRLTGAKWFVILLTIVPAGSRARAGSSLPLSPASNIFLKQTPRRGLPLAWNAGAGSFLFCG
Ga0169721_101761	Ga0169721_10176110	F088920	VSARPHYYLAFGAGLILHLILHFSQKAAIFAPKQVILLLFVPTLFFAGLSVFFPQTSPKISGQTSLYLPWLSPYCLFKD
Ga0169721_101790	Ga0169721_1017901	F089005	LTKSKQCSIIALALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYS
Ga0169721_102474	Ga0169721_10247414	F056682	MKMQSRAGKVANQSIRQGKIYSASFGAFPSKNRSTFPIQKLGKNYKNQEVL
Ga0169721_102595	Ga0169721_1025956	F068811	MDQDGSEHNICSNREGLCPGKEQHGASGWKKIFQHGKEPLRNKDSISQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI
Ga0169721_103741	Ga0169721_1037419	F032286	VTPVRYRALIFDTRLFAGNAADDVRVTGSTFRFCRLMCLCVKRRNVKPDSKRRSLPDSALFHADNRTEQKTISLFSLALIFTFDFAALSERRSCPEDRSRRFVPVGTLALSRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNANFHAYGQDRKGQKFEGRTPLCSQNSPFRNGSKTCAWSAV
Ga0169721_106850	Ga0169721_1068506	F070093	FESLFLAEFCPFRIDPPMEPEQERLSKLYSGSGIHSLPELNSNTI
Ga0169721_111857	Ga0169721_1118571	F078004	FRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLIITVIDALYRLTVDADRMAWMSQGAAERIPPLSLLRKAFTAGSVTVAGVLATHHDVSLAAQTVLIIGTIFHNAF
Ga0169721_112973	Ga0169721_1129733	F078693	MVLAPVRGAERFYIKANCSLLMSKENQKTTSDFDALDPRERGYSPLSD
Ga0169721_120028	Ga0169721_1200282	F081354	LSAKKALDLVRENQQSSAHNFVKDFSSIFPKSRRRSPLKKGAATEIPLEYGKTEVQILFEPLQAAISSMELPKNFENKKLPNTLR
Ga0169721_141757	Ga0169721_1417572	F044555	MKTITRITINQNGNQILTCKVCKDINNILFMSNEGILELISGLNYMDNLPIVPDLEKPIEIQITYTREIPIEQNKEVQTKIKEIIYNNLYDTLVDELKGTISRFQAQYNIQEINPYLQDILQNPED