Sample 3300029235

Overview

Basic Information
IMG/M Taxon OID	3300029235 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127425 \| Gp0192987 \| Ga0168722
Sample Name	Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012066-34
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	186904667
Sequencing Scaffolds	9
Novel Protein Genes	13
Associated Families	13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ct1h53	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal secretion

Location Information
Location	China: Beijing, Peking Union Medical College
Coordinates	Lat. (^o)	39.911947	Long. (^o)	116.4156125	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F055775	Metagenome	138	N
F056309	Metagenome	137	N
F059106	Metagenome	134	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F074964	Metagenome	119	N
F090484	Metagenome	108	N
F090515	Metagenome	108	N
F094005	Metagenome / Metatranscriptome	106	N
F097493	Metagenome	104	Y
F099406	Metagenome	103	N

Family

Category

Number of Sequences

3D Structure?

F032312

Metagenome / Metatranscriptome

180

F044555

Metagenome / Metatranscriptome

154

F055775

Metagenome

138

F056309

Metagenome

137

F059106

Metagenome

134

F060985

Metagenome / Metatranscriptome

132

F064817

Metagenome

128

F074964

Metagenome

119

F090484

Metagenome

108

F090515

Metagenome

108

F094005

Metagenome / Metatranscriptome

106

F097493

Metagenome

104

F099406

Metagenome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0168722_100229	Not Available	86427	Open in IMG/M
Ga0168722_100710	Not Available	44744	Open in IMG/M
Ga0168722_102298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	13947	Open in IMG/M
Ga0168722_102739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	11486	Open in IMG/M
Ga0168722_103013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	10334	Open in IMG/M
Ga0168722_104287	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ct1h53	7026	Open in IMG/M
Ga0168722_106026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4808	Open in IMG/M
Ga0168722_106737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4244	Open in IMG/M
Ga0168722_106821	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4181	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0168722_100229

Not Available

86427

Open in IMG/M

Ga0168722_100710

Not Available

44744

Open in IMG/M

Ga0168722_102298

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

13947

Open in IMG/M

Ga0168722_102739

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

11486

Open in IMG/M

Ga0168722_103013

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium

10334

Open in IMG/M

Ga0168722_104287

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ct1h53

7026

Open in IMG/M

Ga0168722_106026

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

4808

Open in IMG/M

Ga0168722_106737

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

4244

Open in IMG/M

Ga0168722_106821

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

4181

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0168722_100229	Ga0168722_100229105	F064817	MNIKNLFNRFCKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMGLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV
Ga0168722_100229	Ga0168722_10022911	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLRHSETPMGMCKIFDNQDHGFWHWVIKPWFQPERFGITNIWFLLEHGTYFCSNDLLSNGKLHTIKGIQWVEIPLSLVFDDRVFGYWFPPYKKYIPHRLRVLRLALKDLERIKEEYGKD
Ga0168722_100229	Ga0168722_10022912	F032312	MSKIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0168722_100229	Ga0168722_10022913	F094005	MKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHHSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE
Ga0168722_100229	Ga0168722_1002294	F044555	MKTTNPSSRITISQNGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKSTISRFQAQYNIQEINPYLQDILQNPGDLVSLSQHHKR
Ga0168722_100710	Ga0168722_10071052	F055775	MAQIAQQDNLVIEVATTAAALDGDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGKVEAITLN
Ga0168722_102298	Ga0168722_1022988	F097493	MYKFYMKNGTAQFYERGVEIDGTVYGIRTDSDILRIKRSVVNSKFAETDDNFDMDTEIAKIQHTSITFKQPTSEQLSQIQAKTYNSMSDMKQYVQSVMNGELTQDEINAMLLLKIAEMEVAITNEQTTN
Ga0168722_102739	Ga0168722_1027391	F059106	HAIVWKIRVILLQIFVWIVDLKVRERLTEYLKKDIKYHQVIIEVLV
Ga0168722_103013	Ga0168722_1030131	F090484	QWSSDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNITGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASSMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKSGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNHNTTVGNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL
Ga0168722_104287	Ga0168722_10428711	F074964	MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAICKTLEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFSLYSKVYKDTNADKEKGVEAKTADWCAENVVYGSEYKSFGFTTAESLETKKSTKWLIKENDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNQQ
Ga0168722_106026	Ga0168722_1060265	F056309	CLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0168722_106737	Ga0168722_1067376	F090515	VTTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTYIAADYAVKVPAFTALLCRHIGSIRTFLKS
Ga0168722_106821	Ga0168722_1068214	F099406	MAEVGYNSKFEGQEVDSRLKNVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSSYLDLSIFSSTSGTLDEDSYAKVLNAYNNNITLGKLSFYYFSLDYFLDNDNSELKIIAVLFNNTNSKEDVSGSYIDIEMVTYVVSQDKTYRAIANTATLSNDMLSYLKFMAKTPNVVTTLASLPIDAHNIIANVASATNLSMAVSAEDVGREWQVRVNNTTGTDITQPLPTSGLFQSMSGDSVVVPKNSFIELSIWYINDKLVIRVGEQA

Scaffold ID

Protein ID

Family

Sequence

Ga0168722_100229

Ga0168722_100229105

F064817

MNIKNLFNRFCKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMGLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV

Ga0168722_100229

Ga0168722_10022911

F060985

MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLRHSETPMGMCKIFDNQDHGFWHWVIKPWFQPERFGITNIWFLLEHGTYFCSNDLLSNGKLHTIKGIQWVEIPLSLVFDDRVFGYWFPPYKKYIPHRLRVLRLALKDLERIKEEYGKD

Ga0168722_100229

Ga0168722_10022912

F032312

MSKIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS

Ga0168722_100229

Ga0168722_10022913

F094005

MKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHHSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE

Ga0168722_100229

Ga0168722_1002294

F044555

MKTTNPSSRITISQNGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKSTISRFQAQYNIQEINPYLQDILQNPGDLVSLSQHHKR

Ga0168722_100710

Ga0168722_10071052

F055775

MAQIAQQDNLVIEVATTAAALDGDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGKVEAITLN

Ga0168722_102298

Ga0168722_1022988

F097493

MYKFYMKNGTAQFYERGVEIDGTVYGIRTDSDILRIKRSVVNSKFAETDDNFDMDTEIAKIQHTSITFKQPTSEQLSQIQAKTYNSMSDMKQYVQSVMNGELTQDEINAMLLLKIAEMEVAITNEQTTN

Ga0168722_102739

Ga0168722_1027391

F059106

HAIVWKIRVILLQIFVWIVDLKVRERLTEYLKKDIKYHQVIIEVLV

Ga0168722_103013

Ga0168722_1030131

F090484

QWSSDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNITGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASSMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKSGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNHNTTVGNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL

Ga0168722_104287

Ga0168722_10428711

F074964

MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAICKTLEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFSLYSKVYKDTNADKEKGVEAKTADWCAENVVYGSEYKSFGFTTAESLETKKSTKWLIKENDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNQQ

Ga0168722_106026

Ga0168722_1060265

F056309

CLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD

Ga0168722_106737

Ga0168722_1067376

F090515

VTTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTYIAADYAVKVPAFTALLCRHIGSIRTFLKS

Ga0168722_106821

Ga0168722_1068214

F099406

MAEVGYNSKFEGQEVDSRLKNVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSSYLDLSIFSSTSGTLDEDSYAKVLNAYNNNITLGKLSFYYFSLDYFLDNDNSELKIIAVLFNNTNSKEDVSGSYIDIEMVTYVVSQDKTYRAIANTATLSNDMLSYLKFMAKTPNVVTTLASLPIDAHNIIANVASATNLSMAVSAEDVGREWQVRVNNTTGTDITQPLPTSGLFQSMSGDSVVVPKNSFIELSIWYINDKLVIRVGEQA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029235: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012066-34

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences