3300029231: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012069-37

Overview

Basic Information

• IMG/M Taxon OID: 3300029231
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0192990 | Ga0168725
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012069-37
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 153426149
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	2
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F056309	Metagenome	137	N
F056682	Metagenome	137	Y
F073656	Metagenome	120	N
F081354	Metagenome	114	Y
F088920	Metagenome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168725_101355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	13639
Ga0168725_103041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6894
Ga0168725_103293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6436
Ga0168725_103724	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	5802
Ga0168725_106329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	3682
Ga0168725_112987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	1955
Ga0168725_113282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1919
Ga0168725_118366	Not Available	1429
Ga0168725_120156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1303

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168725_101355	Ga0168725_1013558	F029444	MGVSEQLTGFEPEDLMSWTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGFDGAKKAAPFFDF
Ga0168725_103041	Ga0168725_10304110	F056682	MKMQSRAGKVANQPIERGKMYSASFGAFPSKNRSTFPIQELRKNREDQEGLPKSKRQR
Ga0168725_103293	Ga0168725_1032938	F088920	VSARPHYYPAFWAGVILHLILHFSQKVAIFAPKRAISFLFVPTLFFSGLSVLSPQTSPKISGQTSLHQPWLSPYYLFND
Ga0168725_103724	Ga0168725_1037243	F073656	MEQEQDQEQTQAALYVAVDDGNKIVAMERSRRGDEGFRALLDEFTDYAANRGEIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCCKYGLDPLAEGNCSNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVNPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLASYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH
Ga0168725_106329	Ga0168725_1063293	F056682	MQSRAGKVANQSIRQGEIYSASFGAFPSKNRSTIPTQELGKIYEKQEVL
Ga0168725_112987	Ga0168725_1129875	F056682	VKTQSRAGKVANQSVGQSEMYPASFWAFPSKNRSTFPIQELRKNREDQEVL
Ga0168725_113282	Ga0168725_1132824	F029444	MEVSEQLTGFELEDLMSWTVSNLQRPFREDFSLKKSGIIAEKESQILGRRFVGFDS
Ga0168725_118366	Ga0168725_1183661	F056309	VKGTKRTCLRRTPSLSVVPLLLGDSGSLSVSYGIEPEQEALSIVFFKD
Ga0168725_120156	Ga0168725_1201561	F081354	LSAKKALDLVRENQQSSAHNFVKDFSLFFPKICRLCPLKKGAATENPLEYGKTEVQILFEPLQAAISSMELPKNFENKKLPNPLR