Sample 3300029209

Overview

Basic Information
IMG/M Taxon OID	3300029209 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127425 \| Gp0192938 \| Ga0168673
Sample Name	Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002611-17
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	139209946
Sequencing Scaffolds	12
Novel Protein Genes	12
Associated Families	10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal secretion

Location Information
Location	China: Beijing, Peking Union Medical College
Coordinates	Lat. (^o)	39.911947	Long. (^o)	116.4156125	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F052660	Metagenome	142	N
F055715	Metagenome	138	N
F067844	Metagenome	125	N
F067845	Metagenome	125	N
F068855	Metagenome	124	N
F070093	Metagenome	123	N
F071325	Metagenome	122	N
F087335	Metagenome	110	N
F101355	Metagenome	102	N

Family

Category

Number of Sequences

3D Structure?

F026489

Metagenome

197

F052660

Metagenome

142

F055715

Metagenome

138

F067844

Metagenome

125

F067845

Metagenome

125

F068855

Metagenome

124

F070093

Metagenome

123

F071325

Metagenome

122

F087335

Metagenome

110

F101355

Metagenome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0168673_100634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	30316	Open in IMG/M
Ga0168673_100684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	28599	Open in IMG/M
Ga0168673_100790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	25704	Open in IMG/M
Ga0168673_101101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	19412	Open in IMG/M
Ga0168673_101192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	18013	Open in IMG/M
Ga0168673_101754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	12739	Open in IMG/M
Ga0168673_101847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12172	Open in IMG/M
Ga0168673_102017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	11075	Open in IMG/M
Ga0168673_104708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4475	Open in IMG/M
Ga0168673_106140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	3384	Open in IMG/M
Ga0168673_124201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	815	Open in IMG/M
Ga0168673_124948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	785	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0168673_100634

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

30316

Open in IMG/M

Ga0168673_100684

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

28599

Open in IMG/M

Ga0168673_100790

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

25704

Open in IMG/M

Ga0168673_101101

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

19412

Open in IMG/M

Ga0168673_101192

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena

18013

Open in IMG/M

Ga0168673_101754

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

12739

Open in IMG/M

Ga0168673_101847

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

12172

Open in IMG/M

Ga0168673_102017

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium

11075

Open in IMG/M

Ga0168673_104708

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

4475

Open in IMG/M

Ga0168673_106140

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena

3384

Open in IMG/M

Ga0168673_124201

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae

815

Open in IMG/M

Ga0168673_124948

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

785

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0168673_100634	Ga0168673_1006344	F068855	VPIISKCPSSSVPTVEAQGPQVRKILAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW
Ga0168673_100684	Ga0168673_10068424	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFSYVLPRCSYFFKIFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKKACACTLLWISDHFYKKLLPYVIFFFFKIYLKKIDFFQNIA
Ga0168673_100790	Ga0168673_10079023	F026489	VRAAEGGSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKKWAAPKKTEDSRLFGVKIF
Ga0168673_101101	Ga0168673_1011011	F071325	FKVLLALLSDSSIIISKVVLFVKHFFDIFLSLPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0168673_101192	Ga0168673_1011921	F070093	CRVSNFESLLLAEFCPFRIDPPMEPEQERLFKLYSGSGIQSLPELNSKLNPNLFQRI
Ga0168673_101754	Ga0168673_1017548	F026489	LTPKENQKSASDFDALEPRKRGCSPLLTPKKWAAPKKTEDSRLFGVKIF
Ga0168673_101847	Ga0168673_1018472	F052660	MRILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGRFLYGGILMGIALPIPSHRAKSHDFAYWWPVATGHSRSADALPGKSNF
Ga0168673_102017	Ga0168673_10201714	F087335	MIELYFNDANLLPENREEEQYAEAALNNILAGKTADTEMCILPCFYDAPLHKGLLYHLNDGTTLRIRPVLNEAGEPELLIRCVTEETVEEMYQRVSNYDKEKEL
Ga0168673_104708	Ga0168673_1047083	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNAGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTNNLNAFLYWSGCYGVPEDVTVALLLDDSAAMTAWLYAPQADSAAAELLDDAVGHNEMGAAFIDYNGTAYVVAVFR
Ga0168673_106140	Ga0168673_1061401	F070093	FRIDPPMEPEQERLSKLYSGSGIHSLSELNPKSTQTLS
Ga0168673_124201	Ga0168673_1242012	F055715	LTKANEFDKINELLIERTAKKFEKASKNKLKKFLTNEKFCDKINELIRVGTAEILDN
Ga0168673_124948	Ga0168673_1249483	F067844	MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSAGAAVITPQ

Scaffold ID

Protein ID

Family

Sequence

Ga0168673_100634

Ga0168673_1006344

F068855

VPIISKCPSSSVPTVEAQGPQVRKILAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW

Ga0168673_100684

Ga0168673_10068424

F101355

MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFSYVLPRCSYFFKIFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKKACACTLLWISDHFYKKLLPYVIFFFFKIYLKKIDFFQNIA

Ga0168673_100790

Ga0168673_10079023

F026489

VRAAEGGSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKKWAAPKKTEDSRLFGVKIF

Ga0168673_101101

Ga0168673_1011011

F071325

FKVLLALLSDSSIIISKVVLFVKHFFDIFLSLPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL

Ga0168673_101192

Ga0168673_1011921

F070093

CRVSNFESLLLAEFCPFRIDPPMEPEQERLFKLYSGSGIQSLPELNSKLNPNLFQRI

Ga0168673_101754

Ga0168673_1017548

F026489

LTPKENQKSASDFDALEPRKRGCSPLLTPKKWAAPKKTEDSRLFGVKIF

Ga0168673_101847

Ga0168673_1018472

F052660

MRILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGRFLYGGILMGIALPIPSHRAKSHDFAYWWPVATGHSRSADALPGKSNF

Ga0168673_102017

Ga0168673_10201714

F087335

MIELYFNDANLLPENREEEQYAEAALNNILAGKTADTEMCILPCFYDAPLHKGLLYHLNDGTTLRIRPVLNEAGEPELLIRCVTEETVEEMYQRVSNYDKEKEL

Ga0168673_104708

Ga0168673_1047083

F067845

MKHWKNLLVCLLAGVLALGVLTACSGLGSVNAGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTNNLNAFLYWSGCYGVPEDVTVALLLDDSAAMTAWLYAPQADSAAAELLDDAVGHNEMGAAFIDYNGTAYVVAVFR

Ga0168673_106140

Ga0168673_1061401

F070093

FRIDPPMEPEQERLSKLYSGSGIHSLSELNPKSTQTLS

Ga0168673_124201

Ga0168673_1242012

F055715

LTKANEFDKINELLIERTAKKFEKASKNKLKKFLTNEKFCDKINELIRVGTAEILDN

Ga0168673_124948

Ga0168673_1249483

F067844

MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSAGAAVITPQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029209: Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002611-17

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences