NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029208

3300029208: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012073-44



Overview

Basic Information
IMG/M Taxon OID3300029208 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127425 | Gp0192994 | Ga0168729
Sample NameHuman fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012073-44
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size141339411
Sequencing Scaffolds4
Novel Protein Genes9
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHost-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationChina: Beijing, Peking Union Medical College
CoordinatesLat. (o)39.911947Long. (o)116.4156125Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032312Metagenome / Metatranscriptome180N
F044555Metagenome / Metatranscriptome154N
F051936Metagenome143N
F059106Metagenome134N
F064817Metagenome128N
F078693Metagenome116N
F080163Metagenome115N
F101357Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0168729_100157Not Available85575Open in IMG/M
Ga0168729_100964All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii23262Open in IMG/M
Ga0168729_103505All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis5807Open in IMG/M
Ga0168729_130637All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales638Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0168729_100157Ga0168729_10015749F064817MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEKGRRICIQNIIERNINQENQDENETV
Ga0168729_100157Ga0168729_10015754F101357MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLRANQYKLYPLLLDILKISLKDAYYNYSNTSNIHYEGGNFPSMLTIQLFNLEF
Ga0168729_100157Ga0168729_10015762F044555MKTTNPSSRITLSQNGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLEKPIGIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKNTISRFQAQYNIQEINPYLQDILQNPGDLVPLSQHHKR
Ga0168729_100157Ga0168729_10015765F080163MKIIKFLQESFETKERFQQEINFKYSYNRDTIESIDFRINQRNIRYFYEAMQNFENSLVDEFKEKKNNFCNTKQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHIHLVQFDFTTSILIQGFYNYSHRDLSFSTKLESQVLNSENELLQEKLDLIREEICELIGVDPNLEKQGHKDNYVFNLNIDSDNQIGFFLQATEL
Ga0168729_100157Ga0168729_10015768F032312MARIKDYDEDLSAPKILRRRDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLRVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVVWFIIFLYGLVS
Ga0168729_100964Ga0168729_10096421F078693MVVAPVRGAERFYVKWNCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGEVEVEK
Ga0168729_103505Ga0168729_1035051F051936LFFPLALRGKAFGFSVLQEHAVMTPVISIFFVMLIIRYLSIHISIKK
Ga0168729_106113Ga0168729_1061132F078693VECSSVEVSSLLRTKRESEMVLAPVRGAECSCIKANCSLLMSKENQKSTSDFDALDPRERGCSPLSDPKGEVETEKS
Ga0168729_130637Ga0168729_1306373F059106HAIVWKIRVILLQIFVWIVDLKVREHLTEYLKKDIKYHRVIIGVFV
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