3300029207: Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002666-35

Overview

Basic Information

• IMG/M Taxon OID: 3300029207
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0192948 | Ga0168683
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002666-35
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 120457356
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → Parabacteroides johnsonii	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F042936	Metagenome	157	N
F051936	Metagenome	143	N
F071325	Metagenome	122	N
F087336	Metagenome	110	N
F088914	Metagenome	109	N
F088920	Metagenome	109	Y
F088921	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168683_100322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	51271
Ga0168683_100635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	28662
Ga0168683_101237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	16255
Ga0168683_101965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	9966
Ga0168683_104026	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → Parabacteroides johnsonii	4617
Ga0168683_106408	All Organisms → cellular organisms → Bacteria	2842
Ga0168683_117984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	884

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168683_100322	Ga0168683_10032214	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIVTELTDGRVSDRLFSVPYTPKENRKNPGEFIVFSAWYAAKALEMNVK
Ga0168683_100322	Ga0168683_10032238	F087336	MVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHIRERDTKIGLAEQRQVAFLGIAFQILPLKSKQKRAP
Ga0168683_100635	Ga0168683_1006353	F088921	LGATIRLYKIGAGKNHFLCSEKSKNTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMI
Ga0168683_101237	Ga0168683_1012374	F042936	MGRGGGKGRVWKTKEGIMKTSEIVDRGEDTIRHFEKVEQEGALTPPYLGKVYFRSRLRGK
Ga0168683_101965	Ga0168683_1019657	F071325	YCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNPLLKAFHLHAVRFPAAFLLVHRFYLDFEELLSCATAYL
Ga0168683_104026	Ga0168683_1040267	F051936	FFPLALRGKAFGFSVLQEHAVMTPVINIFFAMLIIRYLSIHISIKK
Ga0168683_106408	Ga0168683_1064082	F032286	MVKWVCQIVTPIRHRALVFNTRLFAGTAADDALVTGSTLSFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADYRTEQKTISPFSLALILTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENALKNADFHAHGQDRERAEI
Ga0168683_117984	Ga0168683_1179842	F088920	VSANLHHYPAFWAGLILHLILHFSQKAAIFAPKRAFFILFVPTLFFAGLSVFFPQPSHKISGQTSLYQPWLSPYCLFKD