3300029195: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021314-123

Overview

Basic Information

• IMG/M Taxon OID: 3300029195
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0193155 | Ga0167502
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021314-123
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 100513384
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium 7_1_58FAA	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F026489	Metagenome	197	N
F026592	Metagenome / Metatranscriptome	197	Y
F047125	Metagenome / Metatranscriptome	150	N
F052660	Metagenome	142	N
F062845	Metagenome	130	N
F068855	Metagenome	124	N
F087335	Metagenome	110	N
F089053	Metagenome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0167502_101596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	9514
Ga0167502_101792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8482
Ga0167502_101876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	8050
Ga0167502_102780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium 7_1_58FAA	5676
Ga0167502_103150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	5065
Ga0167502_106516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2491
Ga0167502_106788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2393
Ga0167502_124654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	630
Ga0167502_126906	Not Available	575
Ga0167502_130827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0167502_101596	Ga0167502_1015969	F062845	MEKTPFILHEKFRSDNNEQRKEHFQKEFERYIVDELSDTAPSKSCA
Ga0167502_101792	Ga0167502_1017925	F052660	MCILRILPENTPEKIGQERAGTEWTVVKSKIRLCIRNCSYGRFLHSGILMGIALSIPSHRAKSHDFACWWPAAAGHSRSADALPGKSNS
Ga0167502_101876	Ga0167502_1018763	F026489	LTPKENQKSASDFDALEPRKRXXXXXXXXXXXXPEKTEDSRLFGVKIF
Ga0167502_102780	Ga0167502_1027805	F026592	LLNYRLLFSNLLAANGLSKPFADGKSTGIAALAVQGGVATLTERSDATFAGKQFSSADRE
Ga0167502_103150	Ga0167502_1031509	F068855	VPTVEAQGPQARKTLALQGLQAEKENENANVRNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAAW
Ga0167502_106516	Ga0167502_1065165	F089053	SCVSKMEGPRPDKFAFGVRIGRVVDGCRPVRGCIRKRIYRSANGQLKLSTVKEANVKNMEVF
Ga0167502_106788	Ga0167502_1067883	F047125	MDVVLLLMVLGVMLSGFWAADALDHMRREILQQEGKRRGWWS
Ga0167502_124654	Ga0167502_1246542	F087335	MLELYFNDGNFLPESCEEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIEPFLNKEGEPELLIGCVTEETVGEVYQWVPNYD
Ga0167502_126906	Ga0167502_1269062	F047125	MDVVLLLMVLGVMLSGFWAADALDHMRREIIRQEGKRRGWWS
Ga0167502_130827	Ga0167502_1308272	F013656	EPNKSETETTINVLYSENILSICTNKVDLQKKLNKLLGEPAKEYKIKRSIAGSTWNISLDDKTKIQKIILKANIYDI