3300029185: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012056-15

Overview

Basic Information

• IMG/M Taxon OID: 3300029185
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0192977 | Ga0168712
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012056-15
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 95140228
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F062845	Metagenome	130	N
F070093	Metagenome	123	N
F078693	Metagenome	116	N
F092228	Metagenome	107	N
F097493	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168712_100002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	527434
Ga0168712_100011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	379559
Ga0168712_103048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	3375
Ga0168712_103536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2838
Ga0168712_105864	All Organisms → Viruses → Predicted Viral	1705
Ga0168712_107154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1393
Ga0168712_108495	All Organisms → cellular organisms → Bacteria	1174

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168712_100002	Ga0168712_10000230	F062845	MEKTPFILHEKFRSDNNEQRKEHFQKEFERYIVDSLSDTAPSKSCA
Ga0168712_100011	Ga0168712_100011156	F092228	MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVFDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGDKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYTAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCQDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVANSWVKGYLIDQLAIS
Ga0168712_103048	Ga0168712_1030484	F062845	MKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNAVPPRACT
Ga0168712_103536	Ga0168712_1035361	F078693	MPRREAGLRACGAGLERFFIKANCSLLMSKENQKTTSDFDALDPRERGCSPLSD
Ga0168712_105864	Ga0168712_1058643	F097493	MYKFYSKNGTAYFYERGVEIDGTVYGIHTDRDILRIKRRIVNDKFAETDDNFDMDTEIAKIQHKSITFKQPTSEQLSQIQAKTYNSMSELKQHVQSVMNCDKTXXXXTGRNQRNADVADCRVKGRCWR
Ga0168712_107154	Ga0168712_1071543	F026592	PQGIAALAAQGGVATLTERSDATFSVMQFSSADGE
Ga0168712_108495	Ga0168712_1084952	F070093	EFYPFRIDPPMEPEQERLFKLYSGSGIQSLPELNPNLI