3300029137: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012075-46

Overview

Basic Information

• IMG/M Taxon OID: 3300029137
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0192996 | Ga0168731
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012075-46
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 118804893
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051936	Metagenome	143	N
F089005	Metagenome	109	N
F090515	Metagenome	108	N
F092228	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168731_100003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	515577
Ga0168731_100171	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides	93432
Ga0168731_100641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	33048
Ga0168731_101450	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	12670
Ga0168731_109125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1448

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168731_100003	Ga0168731_100003324	F092228	MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGDKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDETDEYGYSFKVVKQYIFKKYDLKSCKLLKSKNANYVNVIRYVTVCQDTFWFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNYCVYYISEKTESAIICKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVANSWVKGYLIDQLAIS
Ga0168731_100171	Ga0168731_10017160	F051936	MKQEGTGQVLFFPLALRGKAFGFSVLQKHAVMTPAISIFFAMLIIRYLSIQISIKK
Ga0168731_100641	Ga0168731_1006411	F089005	LTKSKQRSIIALALLRLATSNEESKQALKVHRTLKIEQRENSKETRNDFEESSKNYSEMYTKKHQELRI
Ga0168731_101450	Ga0168731_1014506	F051936	MKQEGTGQVLFFPLALRGKAFGFSVLQEHAVMTPVISIFFAILIIRYLSIHISIKK
Ga0168731_109125	Ga0168731_1091251	F090515	EFAGGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS