3300029135: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012085-89

Overview

Basic Information

• IMG/M Taxon OID: 3300029135
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127425 | Gp0193005 | Ga0168740
• Sample Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012085-89
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 188420975
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Intestinimonas → Intestinimonas butyriciproducens	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Location: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F068855	Metagenome	124	N
F087335	Metagenome	110	N
F089053	Metagenome	109	Y
F090514	Metagenome	108	N
F092227	Metagenome	107	N
F092228	Metagenome	107	N
F099451	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168740_100008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	435733
Ga0168740_100693	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	43324
Ga0168740_100906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	34608
Ga0168740_101305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	24280
Ga0168740_102005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Intestinimonas → Intestinimonas butyriciproducens	16094
Ga0168740_103860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	7818
Ga0168740_105894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4729
Ga0168740_115586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1556

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168740_100008	Ga0168740_100008296	F092228	MKKKCTLVLISVLTVACVVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKTIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCQDTFWFFCDETQTVNNVCLDKDVNYPTIQHPNVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGMANSWVKGYLIDQLAIS
Ga0168740_100693	Ga0168740_10069327	F099451	MEIKNVGQLRKIIENLSDDFEIEMRIRRKLTDEELKNYRYPYPYDTEYLTLEFDDIGVSNKVLCLGVTSNE
Ga0168740_100906	Ga0168740_10090610	F090514	MNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADILPRLTGAKWFVILLTIVPAGSRTRAGSSLPLSPASNIFLKQTPRRGLPLAWNAGAGSFLFCG
Ga0168740_101305	Ga0168740_10130517	F087335	MIELYFNDANLMPENREEEQYAEAALNSILAGKTADVEMCIQPCFYDAPLHKGLLYNLDDGTTLRIRPILNEVGEPELLIRCVTEESVETVYQGVANYD
Ga0168740_102005	Ga0168740_10200520	F029444	MEVSEQLTGFEPEDLMSWTVSNLQSPFREDFSLEISGIIAEKESQIFGCRFVGFDS
Ga0168740_103860	Ga0168740_10386012	F068855	VPTVEAQGPQVRKSLALQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGTVW
Ga0168740_105894	Ga0168740_1058941	F089053	ERSCVSKMEGPRLDKFRFGSRNGCVVGGCGPIKGCIRKWIYGFANGQPELSTAEEVNVKNMGAFL
Ga0168740_115586	Ga0168740_1155862	F092227	MNEQKHKRLLRIGCLVLAGVFALSLLGSVLMMLLF