Sample 3300029113

Overview

Basic Information
IMG/M Taxon OID	3300029113 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127425 \| Gp0193151 \| Ga0168853
Sample Name	Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021310-108
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	153472051
Sequencing Scaffolds	11
Novel Protein Genes	12
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal secretion

Location Information
Location	China: Beijing, Peking Union Medical College
Coordinates	Lat. (^o)	39.911947	Long. (^o)	116.4156125	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F029444	Metagenome	188	Y
F052660	Metagenome	142	N
F067720	Metagenome	125	Y
F068811	Metagenome	124	N
F076189	Metagenome	118	N
F076190	Metagenome	118	Y
F089054	Metagenome	109	N
F097172	Metagenome / Metatranscriptome	104	Y
F099451	Metagenome	103	N
F105374	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F026489

Metagenome

197

F029444

Metagenome

188

F052660

Metagenome

142

F067720

Metagenome

125

F068811

Metagenome

124

F076189

Metagenome

118

F076190

Metagenome

118

F089054

Metagenome

109

F097172

Metagenome / Metatranscriptome

104

F099451

Metagenome

103

F105374

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0168853_100170	Not Available	86141	Open in IMG/M
Ga0168853_100349	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	57109	Open in IMG/M
Ga0168853_100978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	27048	Open in IMG/M
Ga0168853_101087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	24485	Open in IMG/M
Ga0168853_101527	Not Available	17879	Open in IMG/M
Ga0168853_101705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	16210	Open in IMG/M
Ga0168853_102229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12358	Open in IMG/M
Ga0168853_102268	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	12087	Open in IMG/M
Ga0168853_103316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	8103	Open in IMG/M
Ga0168853_107261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3354	Open in IMG/M
Ga0168853_107518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3215	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0168853_100170

Not Available

86141

Open in IMG/M

Ga0168853_100349

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

57109

Open in IMG/M

Ga0168853_100978

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

27048

Open in IMG/M

Ga0168853_101087

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

24485

Open in IMG/M

Ga0168853_101527

Not Available

17879

Open in IMG/M

Ga0168853_101705

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae

16210

Open in IMG/M

Ga0168853_102229

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

12358

Open in IMG/M

Ga0168853_102268

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes

12087

Open in IMG/M

Ga0168853_103316

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

8103

Open in IMG/M

Ga0168853_107261

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

3354

Open in IMG/M

Ga0168853_107518

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

3215

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0168853_100170	Ga0168853_1001702	F089054	MLTSGKFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQEINPWHKHSTYIRLKLREILKVNLTDITIIDIISLP
Ga0168853_100349	Ga0168853_1003494	F067720	MSSTTYEHFVDTNKMYAAQEQFRHVTKMVCACFRDLTKTYHLGNVTVMVRNAGQLPQPFWLGAACGGGSCSLSASVARA
Ga0168853_100978	Ga0168853_1009781	F026489	LVAKENQKTTSDFDALEPRKRGCSPLLTPKKWAAPKKTEDSRLFGVKIF
Ga0168853_101087	Ga0168853_1010879	F052660	MCILRVLPENTPKKIGQERAGTEWTVVKSKIRLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDFAHWWPAAAGHSRSADALPGKSNS
Ga0168853_101527	Ga0168853_10152728	F099451	MEIKNVGQLRKIIENLPDDFEIEMRIRRKLTDEELKNCRYPYPYDTEYLTLEFDDIGVSDKVLCLGVTSNE
Ga0168853_101705	Ga0168853_1017053	F097172	MKKNVLKKLMCAVLAAACVATAVVPAMADDVVTAEAATKSVTSVYKYHLEGCDKKGYVMDGFSKSSFYKDLNSLPAVKMGKTTINVPAVTSSVKSISKEKGKPRYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCFYYGFCKPIKNGKKYTLENLYPDTVGNYGDLYENNYLAKFRTIFDNYKAEHPEYADAIDETYNDESEYVSKHPVNKIKFTTKLKKGRTYVFSVDNIGMAEPCKPYLDDFGSDHQSCLSGGNYLKAYSFDMNIEYKK
Ga0168853_101705	Ga0168853_1017054	F097172	MKKNVLKKLMCAVLAVACVATAVVPAMADNVVTAEATTKKVTSVYKYHLEGYDKKGYVMDGFSKVAFYKDLNSLPAVKTGKTTINVPAVTSSVKSVSKEKGKPRYESFVKFKAPKTGKYVFTLNNLQGTDDKSLKCFGGGIYKPVKNGKKYTLEDLYPDEVGDYTTLYENNYLAKFRTIFDNYKAEHPEYADAIDETYNDESEYVSKHPVNKIKFTTRLKKGQTYVYVIDNIGMAEPCKPYLDDFGSDHQSCLSGGNYLKAYSFDMNIEYRK
Ga0168853_102229	Ga0168853_1022291	F076190	EARSGGWNGRSSWARTAGGSITIFVKNVFTAASRVLGRVWSLVRITIPNGLKYVKIGVEKPQNNSLYPYFQREPL
Ga0168853_102268	Ga0168853_1022687	F105374	MKKRVALLVALCIWKVVAAQTPYGEMPELFRPDTLPCRLGGGVCFGMDGLDAAILRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP
Ga0168853_103316	Ga0168853_1033169	F068811	MDQDGSEHNICSNREGLCPGKEQHGASGWKKIFRHGKEPLRNKDSVSQYCNKKVAVSLILNENVSETLCIFSINKTNCCRIK
Ga0168853_107261	Ga0168853_1072615	F076189	VLSAGHCFFLFPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLRAIQSXXXXXXXXXXXXXXHENTFWLLIFYANYAIL
Ga0168853_107518	Ga0168853_1075184	F029444	MGVSERLTGFELEDLMSWTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGFDRPKKAAPFFNF

Scaffold ID

Protein ID

Family

Sequence

Ga0168853_100170

Ga0168853_1001702

F089054

MLTSGKFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQEINPWHKHSTYIRLKLREILKVNLTDITIIDIISLP

Ga0168853_100349

Ga0168853_1003494

F067720

MSSTTYEHFVDTNKMYAAQEQFRHVTKMVCACFRDLTKTYHLGNVTVMVRNAGQLPQPFWLGAACGGGSCSLSASVARA

Ga0168853_100978

Ga0168853_1009781

F026489

LVAKENQKTTSDFDALEPRKRGCSPLLTPKKWAAPKKTEDSRLFGVKIF

Ga0168853_101087

Ga0168853_1010879

F052660

MCILRVLPENTPKKIGQERAGTEWTVVKSKIRLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDFAHWWPAAAGHSRSADALPGKSNS

Ga0168853_101527

Ga0168853_10152728

F099451

MEIKNVGQLRKIIENLPDDFEIEMRIRRKLTDEELKNCRYPYPYDTEYLTLEFDDIGVSDKVLCLGVTSNE

Ga0168853_101705

Ga0168853_1017053

F097172

MKKNVLKKLMCAVLAAACVATAVVPAMADDVVTAEAATKSVTSVYKYHLEGCDKKGYVMDGFSKSSFYKDLNSLPAVKMGKTTINVPAVTSSVKSISKEKGKPRYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCFYYGFCKPIKNGKKYTLENLYPDTVGNYGDLYENNYLAKFRTIFDNYKAEHPEYADAIDETYNDESEYVSKHPVNKIKFTTKLKKGRTYVFSVDNIGMAEPCKPYLDDFGSDHQSCLSGGNYLKAYSFDMNIEYKK

Ga0168853_101705

Ga0168853_1017054

F097172

MKKNVLKKLMCAVLAVACVATAVVPAMADNVVTAEATTKKVTSVYKYHLEGYDKKGYVMDGFSKVAFYKDLNSLPAVKTGKTTINVPAVTSSVKSVSKEKGKPRYESFVKFKAPKTGKYVFTLNNLQGTDDKSLKCFGGGIYKPVKNGKKYTLEDLYPDEVGDYTTLYENNYLAKFRTIFDNYKAEHPEYADAIDETYNDESEYVSKHPVNKIKFTTRLKKGQTYVYVIDNIGMAEPCKPYLDDFGSDHQSCLSGGNYLKAYSFDMNIEYRK

Ga0168853_102229

Ga0168853_1022291

F076190

EARSGGWNGRSSWARTAGGSITIFVKNVFTAASRVLGRVWSLVRITIPNGLKYVKIGVEKPQNNSLYPYFQREPL

Ga0168853_102268

Ga0168853_1022687

F105374

MKKRVALLVALCIWKVVAAQTPYGEMPELFRPDTLPCRLGGGVCFGMDGLDAAILRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP

Ga0168853_103316

Ga0168853_1033169

F068811

MDQDGSEHNICSNREGLCPGKEQHGASGWKKIFRHGKEPLRNKDSVSQYCNKKVAVSLILNENVSETLCIFSINKTNCCRIK

Ga0168853_107261

Ga0168853_1072615

F076189

VLSAGHCFFLFPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLRAIQSXXXXXXXXXXXXXXHENTFWLLIFYANYAIL

Ga0168853_107518

Ga0168853_1075184

F029444

MGVSERLTGFELEDLMSWTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGFDRPKKAAPFFNF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029113: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021310-108

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences