3300029060: Human fecal microbial communities from mother in Denmark - 263_M

Overview

Basic Information

• IMG/M Taxon OID: 3300029060
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193596 | Ga0169602
• Sample Name: Human fecal microbial communities from mother in Denmark - 263_M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 196539917
• Sequencing Scaffolds: 26
• Novel Protein Genes: 32
• Associated Families: 32

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	5
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii → Faecalibacterium prausnitzii M21/2	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039198	Metagenome	164	Y
F041054	Metagenome / Metatranscriptome	160	Y
F042095	Metagenome	159	N
F042737	Metagenome / Metatranscriptome	157	Y
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F047126	Metagenome	150	N
F050794	Metagenome	145	N
F052660	Metagenome	142	N
F055715	Metagenome	138	N
F056309	Metagenome	137	N
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F067845	Metagenome	125	N
F068941	Metagenome	124	N
F070133	Metagenome	123	N
F073573	Metagenome	120	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F078822	Metagenome	116	N
F080673	Metagenome	115	N
F083451	Metagenome	113	N
F083452	Metagenome	113	N
F085718	Metagenome	111	N
F087335	Metagenome	110	N
F088914	Metagenome	109	N
F088921	Metagenome	109	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F099269	Metagenome	103	N
F101192	Metagenome	102	N
F101355	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169602_1000330	Not Available	48826
Ga0169602_1000354	Not Available	46752
Ga0169602_1000442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	39691
Ga0169602_1000592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena	31323
Ga0169602_1000698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	26972
Ga0169602_1000808	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	24478
Ga0169602_1002105	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	11389
Ga0169602_1002967	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	8628
Ga0169602_1003004	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	8554
Ga0169602_1004344	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	6432
Ga0169602_1004624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6091
Ga0169602_1004776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	5927
Ga0169602_1005230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	5477
Ga0169602_1007302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4126
Ga0169602_1007457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4053
Ga0169602_1010592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3009
Ga0169602_1022354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1521
Ga0169602_1025005	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1368
Ga0169602_1029603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1171
Ga0169602_1032504	All Organisms → cellular organisms → Bacteria	1071
Ga0169602_1037263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii → Faecalibacterium prausnitzii M21/2	944
Ga0169602_1039079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	902
Ga0169602_1048009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	736
Ga0169602_1057710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	621
Ga0169602_1062990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	575
Ga0169602_1070019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	518

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169602_1000330	Ga0169602_100033028	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKAQGRDDYCIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDMPGLEFLAVSHTMYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNIQTLELSSCYLDRYIKEFNDLPKLTSLKIHPGPSDMWNYFDINTLPFFEVDKINPNITDFCFLDDWVSGERRTGWNDDNTSGRGLEHLTSFVATHSNGLRMDKLPDYIYEMRAITRFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYIAAYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPA
Ga0169602_1000330	Ga0169602_100033034	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLIRYYLNRKDDETIRSIQTLLVYWESLNKINHIDDPESTSFGLPDDYLWFSNIKGAFSYNGCEVGDFVMWEAKNENVHELLGDDNNRPSFDYRETFYTIGDGKVVVYEDGFRTDEVRMTYYRNPVRVDLAGYINAAGERSTDIDPELPDPLVEEILDMVAKQFNLNENELSRYRMDKDNVASFK
Ga0169602_1000330	Ga0169602_100033035	F089592	MKEILKSKKVLVEVNGFNIMSDTLYEVVGKHDESAPQAFQDANIAKAPFPENATHVCCPWDDFSEVYNTGFYPRSRCYNGMDKDEVDKLVDQRVNNIMKPFENISQKNLSQTNFEFWDDAKDKIYMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPIFMNSMFCFIEKDNAKDFVQQREINKMNISYKFIDALKKGGKERQAVIDLLLYIGIVTRPDFTEDDYYTGSLSNWMNEKKTNIDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDTRTSAEFLATKKDLISVKANVLDEYEELMSISNIDDKTRTKKVKDIKKKEDVGEGDKVNTEE
Ga0169602_1000330	Ga0169602_10003304	F064725	MVDWIFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEVGWVERTERGFRWNSCTECCKEEFEKTITEKLYIGSHEVRFHYHHPVRLSIGRGLRRDCASDKYRDKYAWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKMV
Ga0169602_1000354	Ga0169602_100035412	F050794	MAPVGTLYIMQLDAFLHRKIMQDLRIQRVKVLMMLYISNYFVKVRQKQLLDHAYSLSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANTIIEHNGIIKKLMKEAEKLELDTDAIKTMMRDLLGELKDDIDLNILIFDVSQLLTKYNLFRLEAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYDYALYITEEYN
Ga0169602_1000442	Ga0169602_100044234	F087335	MIGLYFNDANVLTENREEEQYAEVALNSILAGKTADVAMCIQPCFYDAPLHKGLLYNLDDGTTLQIRPILNEVGEPELLIRCVTKG
Ga0169602_1000592	Ga0169602_10005921	F056309	RVRSTVKGTKRTCLRRTPSLSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD
Ga0169602_1000698	Ga0169602_100069816	F042737	MKLTEKSNEVYSYVKENGGRVSVDELCSVLGRAPRSVNANVTDLFKKGLVVRDKVAGEGEDAKDITYVVLTDEGKAFVPSDDE
Ga0169602_1000808	Ga0169602_100080816	F078005	MKKSEFVKELERIIDMVKAEDDGFEYGGKVIFYKENDDNYEISVKNIEMNLMVEANTMASMNDRTFACLMSEVYKQKFTKAITISEDEDDEDN
Ga0169602_1000808	Ga0169602_100080836	F083451	MIMDKNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMKCRQEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDIFKEEAKMTKETDRSKIEEFNKRLDHE
Ga0169602_1002105	Ga0169602_10021057	F041054	MVNKIRNCKDIGLNLQKIMKRLMANDNLIKLLYYTDKDPLSNENLSEEQKESEVFEKLIKIVPRIGPKETAKSVIAIRVVDGKKNSENKEFKDVYISIESFVPLTQWMIKGTNLRPFAILGEIEESLNGKIIEGLGRMSGGDFELNFLTEEISSYKQDFYITSYD
Ga0169602_1002967	Ga0169602_10029678	F083452	MSGRIKIKSEDKDKRPKIDVFKVIGNRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIDKYVKRK
Ga0169602_1003004	Ga0169602_10030042	F058555	MGDLHRLPIHPNNLFRIDETCIFAANKNIMETKVALLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQATAYLSIINVRKHVFLRNRMRDGYRDRIEINTDDFIDILSDGIAYFCYRHVIENCHEDIDYQLKTLKAYAEGEIRIALSDIIIYSYKAKKNEDTKEIFVGKKRSVYKCLDKNLSSNERRNMANKSRKFDRVRILSKIIFRARTRNVHHIYKVTKRKTIKFNVAYLLNELNKKLAGIGMHEISQSTIYRYISMFLGMCKKSISDLYDEVKKNNGIANAKDRKNVTIGHLRLSYRGKIMHIIIAEDFIKDVFLGVKGSEMSKAG
Ga0169602_1004344	Ga0169602_100434411	F078006	MLNQALAGRKEYHDRTCADMVRGRFPAPWRNLNINDMGDNILRKAADELKKAGCRVFAWQDDTYNRGWSKGDYTMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSRGSGSGCCVKEEATFDLEAALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI
Ga0169602_1004344	Ga0169602_10043449	F085718	MVIEFDFEIYKNGDYDKVYLRDGKEARVLCDNGKGNRPMVVMVEDDNANDYIVLRYNETGRRDINSQSSLDLMLSVKEREPESWVVVISYMDNKDQGQKMVLPNFFSRNIRGDIYLQGSPKSSVSYYVDKLEEDKCLDELCEKIRVKRDRIYNMEIISLSDDEETV
Ga0169602_1004624	Ga0169602_10046246	F047126	VYLKTKKMTNISQTQAGFKSKSLGSLCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILPSLESPCILCSLLRYFHILSKKLQKTC
Ga0169602_1004776	Ga0169602_10047762	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0169602_1005230	Ga0169602_10052302	F052660	MCILRVLPEKTSERIGQERAGTEWTVVKSKIRLCIRNRSYGRFLHDGILMGIALPIPAHRAKSHDFACWWPAAADHSRSADALPGKSNF
Ga0169602_1007302	Ga0169602_10073024	F042936	MGRRGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGK
Ga0169602_1007457	Ga0169602_10074572	F088921	LEAAKKIAVKTSALGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSTMIRDKMRNK
Ga0169602_1010592	Ga0169602_10105924	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGEFIVFSAWYAAKALGKDVK
Ga0169602_1022354	Ga0169602_10223543	F070133	MKRLLGLLLAMMVMMGGMAGAQASTDNVSMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEKIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLMIYDWSFCACSDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNENVRDAACIGQTAYMRIRLTNEKSEILLYDITQQKITDSQTLLAVDDNSYIAEIKAAGAVLLSVDGYWNRELQRQK
Ga0169602_1025005	Ga0169602_10250054	F080673	MDEIELLRLQDEALSYLRDNITKDEAYYILTTDKDIIGILIADKKDGSERIKILDMEYTVGKDDMLLLFDTDGIIDECLLVASYIGVNIYFRGQDVNAILNNIDRGKVMEYPYIAIQLDNIRTIEKRRVIFEITGHRMNDNKERIDFMFVYFMA
Ga0169602_1029603	Ga0169602_10296032	F039198	MRITNTEIQGTKYVQIYLTEDELQKKETKDLAQKYKQEKYSVAIFVTGKENYPEILEKIITKQVELNRNVC
Ga0169602_1032504	Ga0169602_10325042	F055715	LTKANEFDKINELLIERTAKKFERVSKNKLKKFLTNEKLCDKINELIRVGTAEILDN
Ga0169602_1037263	Ga0169602_10372632	F101355	IEPPFQHGIADMAFWFIQWYLPSAQLPQPKGAGAVFPYVLPLCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA
Ga0169602_1039079	Ga0169602_10390791	F101192	ALSGTQTSLCQRMRSVPVYRGLTYWEVQQIAKAAPTSITPCGEDTIRRWVSGRYQIALRFNRYDVCLGVEEEIDG
Ga0169602_1039079	Ga0169602_10390792	F073573	MPTIVSFYQRFPNEAPPLNLSAFDHTGYTYAENFRRNERCYEAEQCEVTSDDGSVVLSLDVRIRPRGGEIEALPRVMLSVYSEGMLFQVRRMELRTGDTTYAILPDNVQQYTMRGDTDGGFLETMAIPLGKVGMKMLLEASD
Ga0169602_1048009	Ga0169602_10480092	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGNVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMSYTDDLNDFLYWSGCYGVPDDVTVALLLDDSTAMTARLYAPQADSAAAE
Ga0169602_1057710	Ga0169602_10577101	F068941	WSSSDNMNVNVKIDGGTVTFNGGSNITSTIIPTATKEEGIKKDITVKASKAGVTMNLYMNLTTMPDELKEKSFEYEIYYNSSTLVKKGNFGVYNSNTNTSGIAYATSGVTTLTLFTGRDVSTNSTDKYTLYLWFNGKDYTNPNTMQSKKLSFDLYATGENAVLAGN
Ga0169602_1062990	Ga0169602_10629901	F099269	DDLGDRAGGASVLASATGDAGVLVSNGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV
Ga0169602_1070019	Ga0169602_10700191	F078822	KAFHLHAVRFPAAFLLVHRFYLAFEELLSCATAYL