Sample 3300029032

Overview

Basic Information
IMG/M Taxon OID	3300029032 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127429 \| Gp0193740 \| Ga0169753
Sample Name	Human fecal microbial communities from mother in Denmark - 532_M
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	79925030
Sequencing Scaffolds	12
Novel Protein Genes	12
Associated Families	12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	Denmark
Coordinates	Lat. (^o)	55.678	Long. (^o)	12.531	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F032286	Metagenome / Metatranscriptome	180	Y
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F047125	Metagenome / Metatranscriptome	150	N
F047126	Metagenome	150	N
F056682	Metagenome	137	Y
F067845	Metagenome	125	N
F076190	Metagenome	118	Y
F087334	Metagenome	110	N
F092227	Metagenome	107	N
F101355	Metagenome	102	N

Family

Category

Number of Sequences

3D Structure?

F026592

Metagenome / Metatranscriptome

197

F032286

Metagenome / Metatranscriptome

180

F042936

Metagenome

157

F044554

Metagenome

154

F047125

Metagenome / Metatranscriptome

150

F047126

Metagenome

150

F056682

Metagenome

137

F067845

Metagenome

125

F076190

Metagenome

118

F087334

Metagenome

110

F092227

Metagenome

107

F101355

Metagenome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0169753_100325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	23388	Open in IMG/M
Ga0169753_100921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	11174	Open in IMG/M
Ga0169753_101542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	7418	Open in IMG/M
Ga0169753_102143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5680	Open in IMG/M
Ga0169753_103616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3563	Open in IMG/M
Ga0169753_103682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	3514	Open in IMG/M
Ga0169753_105198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2592	Open in IMG/M
Ga0169753_105618	All Organisms → cellular organisms → Bacteria	2414	Open in IMG/M
Ga0169753_106310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2183	Open in IMG/M
Ga0169753_109256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1531	Open in IMG/M
Ga0169753_109700	All Organisms → cellular organisms → Bacteria	1465	Open in IMG/M
Ga0169753_130654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	516	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0169753_100325

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

23388

Open in IMG/M

Ga0169753_100921

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

11174

Open in IMG/M

Ga0169753_101542

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

7418

Open in IMG/M

Ga0169753_102143

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

5680

Open in IMG/M

Ga0169753_103616

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

3563

Open in IMG/M

Ga0169753_103682

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

3514

Open in IMG/M

Ga0169753_105198

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

2592

Open in IMG/M

Ga0169753_105618

All Organisms → cellular organisms → Bacteria

2414

Open in IMG/M

Ga0169753_106310

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

2183

Open in IMG/M

Ga0169753_109256

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74

1531

Open in IMG/M

Ga0169753_109700

All Organisms → cellular organisms → Bacteria

1465

Open in IMG/M

Ga0169753_130654

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

516

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0169753_100325	Ga0169753_10032518	F047125	MDVVLLLMVLGVMLSGFWAADALDHIRKEIICQEGKRRGWWS
Ga0169753_100921	Ga0169753_1009212	F042936	VWKTKEGIMKTSEIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSQLRGKG
Ga0169753_101542	Ga0169753_1015422	F092227	MNDKKRKRILRVGCLILACVFGLSLLGSLVMMLLV
Ga0169753_102143	Ga0169753_1021431	F026592	TASPQGIAALAAQGGVATLTERSDETFSVVQFSSADRE
Ga0169753_103616	Ga0169753_1036162	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSLLLAITFLYHPKDFFLYRAAALFEYREKHP
Ga0169753_103682	Ga0169753_1036823	F101355	MIEPPFQHGIADMAFGFIQWYLPSAQPPQPKGAGAVFPYVLPLCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKFLPYVLFFFFKIYLKKIDFFQNIA
Ga0169753_105198	Ga0169753_1051983	F044554	GSAQGKCCAAGGGSVSWRSASPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISQYLFLSFPFSFRTNFAQTLFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0169753_105618	Ga0169753_1056185	F056682	MDEKPHKSKGVKTQSRGGKVANQSVGQSEMYPASFWAFPSKNRSTFPIQELRKNREDQEV
Ga0169753_106310	Ga0169753_1063102	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADNNMSHTDDLNDFLYWSGCYGVPDDVTVALLLDDSAAMTAQLYAPQADSAAAKLLEDAAGHSELGAAFIDYNGTAYVVAVFR
Ga0169753_109256	Ga0169753_1092564	F047126	VYLKTKKMTNILQTQAGFKAKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0169753_109700	Ga0169753_1097003	F076190	ISVKNVFTAASRVSGRVWSLARITVPNGLKSVRIRGRKTQNNSLYSYFQREPL
Ga0169753_130654	Ga0169753_1306541	F032286	ADDTLVTGGPFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTGQKTFSPFSLALIFTFDFASLSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNANFHAYGQDRKRAEI

Scaffold ID

Protein ID

Family

Sequence

Ga0169753_100325

Ga0169753_10032518

F047125

MDVVLLLMVLGVMLSGFWAADALDHIRKEIICQEGKRRGWWS

Ga0169753_100921

Ga0169753_1009212

F042936

VWKTKEGIMKTSEIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSQLRGKG

Ga0169753_101542

Ga0169753_1015422

F092227

MNDKKRKRILRVGCLILACVFGLSLLGSLVMMLLV

Ga0169753_102143

Ga0169753_1021431

F026592

TASPQGIAALAAQGGVATLTERSDETFSVVQFSSADRE

Ga0169753_103616

Ga0169753_1036162

F087334

MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSLLLAITFLYHPKDFFLYRAAALFEYREKHP

Ga0169753_103682

Ga0169753_1036823

F101355

MIEPPFQHGIADMAFGFIQWYLPSAQPPQPKGAGAVFPYVLPLCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKFLPYVLFFFFKIYLKKIDFFQNIA

Ga0169753_105198

Ga0169753_1051983

F044554

GSAQGKCCAAGGGSVSWRSASPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISQYLFLSFPFSFRTNFAQTLFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL

Ga0169753_105618

Ga0169753_1056185

F056682

MDEKPHKSKGVKTQSRGGKVANQSVGQSEMYPASFWAFPSKNRSTFPIQELRKNREDQEV

Ga0169753_106310

Ga0169753_1063102

F067845

MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADNNMSHTDDLNDFLYWSGCYGVPDDVTVALLLDDSAAMTAQLYAPQADSAAAKLLEDAAGHSELGAAFIDYNGTAYVVAVFR

Ga0169753_109256

Ga0169753_1092564

F047126

VYLKTKKMTNILQTQAGFKAKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC

Ga0169753_109700

Ga0169753_1097003

F076190

ISVKNVFTAASRVSGRVWSLARITVPNGLKSVRIRGRKTQNNSLYSYFQREPL

Ga0169753_130654

Ga0169753_1306541

F032286

ADDTLVTGGPFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTGQKTFSPFSLALIFTFDFASLSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNANFHAYGQDRKRAEI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029032: Human fecal microbial communities from mother in Denmark - 532_M

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences