3300029031: Human fecal microbial communities from infant at 12 months in Denmark - 276_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300029031
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193620 | Ga0169626
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 276_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 109103903
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062845	Metagenome	130	N
F078693	Metagenome	116	N
F089053	Metagenome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169626_100237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	59770
Ga0169626_100554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	31447
Ga0169626_122306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	517

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169626_100237	Ga0169626_10023724	F089053	MEGPRPDKFAFGVRIGRVVDECRTVKGCIRKWLYIFAYGQPELSTAEEVNVKSMEAFV
Ga0169626_100554	Ga0169626_10055419	F062845	MKKTPFILHEKFRSDNNEQRKEDFQKKFERYIIDGLLNAVPPRSCA
Ga0169626_122306	Ga0169626_1223062	F078693	MVLAPVRGAERSFVKADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEWEVEVEKC