3300029021: Human fecal microbial communities from infant at 12 months in Denmark - 503_12M

Overview

Basic Information

• IMG/M Taxon OID: 3300029021
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127429 | Gp0193704 | Ga0169710
• Sample Name: Human fecal microbial communities from infant at 12 months in Denmark - 503_12M
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 113394517
• Sequencing Scaffolds: 8
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F047125	Metagenome / Metatranscriptome	150	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F067720	Metagenome	125	Y
F068811	Metagenome	124	N
F070093	Metagenome	123	N
F073656	Metagenome	120	N
F080163	Metagenome	115	N
F092227	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0169710_100178	Not Available	85922
Ga0169710_100313	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	57065
Ga0169710_101121	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	15072
Ga0169710_104786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3090
Ga0169710_107638	All Organisms → cellular organisms → Bacteria	1969
Ga0169710_110255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1477
Ga0169710_112560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1215
Ga0169710_112634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1207

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0169710_100178	Ga0169710_10017825	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDAMVCLGFTWFKLLGVALMMLLWPIVFIYALHDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0169710_100178	Ga0169710_10017826	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKVIDFLEHSGTAMGMCNIFNSQDHEFWHSVIKPWFQPERFGITHLWFPSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPYYKKYIPHRIKILKLALKDLERIKEEYGKD
Ga0169710_100178	Ga0169710_10017827	F080163	MKTIKFLQESFETKERFQQEINIKYFYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCDAKQFLESINNFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESQVLDSEIELLQEKLDLIREEICELIGIDPNLEKQSHKDNYVFNLNIDSDNQIGFFLQATEL
Ga0169710_100178	Ga0169710_10017831	F044555	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNIPTVPDLEKPIEIQVSTTRQISLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0169710_100178	Ga0169710_10017844	F064817	MNIKNLFNRFRKRESELSYSLNLIYLEDTKVIFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0169710_100313	Ga0169710_1003138	F067720	MASTTYRHLGDVTGMFAAQEQFRDITKMVTFCHRFAVLGTMVRNAGELPQPFWLGAACGGGSCSAARCAARA
Ga0169710_101121	Ga0169710_10112110	F073656	MEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRCCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVNPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGTEFHLKRH
Ga0169710_104786	Ga0169710_1047862	F092227	MNEQKHKRWLRIGCLVLAGVFALSLLSSVIMLLLY
Ga0169710_107638	Ga0169710_1076384	F070093	CSFRIDPPMEPEQERFSKLYSGSGIHSLPELNPKSI
Ga0169710_110255	Ga0169710_1102553	F032286	VTPVRHSALIFDTRLSAGNAANDVLITGSTFHFCRLTCLCVKRRNVILNGKRRSLLDSTLFHTDNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRSRRFVLLGALDAALRRRTYPVRTVMQFSTPHEMPSQLRMKI
Ga0169710_112560	Ga0169710_1125601	F047125	MDVVLLLMVLGVMLSGFWAADALDHMRKEILQQEGKRRGW
Ga0169710_112634	Ga0169710_1126343	F068811	MDKMDQDGSEHNICSNREGLCPGKEQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI