3300028903: Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_RA_Asp

Overview

Basic Information

• IMG/M Taxon OID: 3300028903
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116197 | Gp0313025 | Ga0302250
• Sample Name: Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_RA_Asp
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 234987191
• Sequencing Scaffolds: 24
• Novel Protein Genes: 27
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
Not Available	5
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA395	1
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → Candidatus Velamenicoccus → Candidatus Velamenicoccus archaeovorus	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Activated Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 44.11
  • Long. (^o): -88.23
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000388	Metagenome / Metatranscriptome	1201	Y
F020914	Metagenome / Metatranscriptome	221	N
F023098	Metagenome / Metatranscriptome	211	Y
F026449	Metagenome / Metatranscriptome	198	Y
F029455	Metagenome / Metatranscriptome	188	Y
F036769	Metagenome / Metatranscriptome	169	Y
F047076	Metagenome / Metatranscriptome	150	N
F048337	Metagenome / Metatranscriptome	148	N
F059033	Metagenome / Metatranscriptome	134	N
F065806	Metagenome / Metatranscriptome	127	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0302250_1000040	All Organisms → cellular organisms → Bacteria	228454
Ga0302250_1000251	Not Available	63139
Ga0302250_1000982	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	23404
Ga0302250_1004652	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6505
Ga0302250_1005591	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica	5442
Ga0302250_1010110	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2992
Ga0302250_1011639	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	2579
Ga0302250_1011678	Not Available	2570
Ga0302250_1011844	All Organisms → cellular organisms → Bacteria	2531
Ga0302250_1013900	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2140

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0302250_1000040	Ga0302250_1000040163	F069433	MAHKLPPKQCSSNTPAWTDPVLTDLSTKVRKVHIDELRSFLNAEFVRRGLTQASFTDPTITALVTEIRKVHVDQLRTELAACKSGRGEAGYCPQDSSGCMDFTDPTITALSTEVKGIHFRQTMQKVQALMTGCICETEQCQYCADCGYHYTTCSHAGVACDDHKYSECHHSINHYWNCASINLPSAAEHPYKSANPPLAWDGYVPWDWCVYTPPGSNWGSCEYSGGHDHTAWNCKCNPYT
Ga0302250_1000251	Ga0302250_10002514	F000388	MKVVFVCTEYFQTEDEKVYFFEPLEKEISVEDMQKIVDANEKLVKELKDGKNSMLVNRKG
Ga0302250_1000982	Ga0302250_10009824	F047076	MTNGELYALAQLIIPELTAKAFVQFYNIAFEKISREVRLLTTVLRPTSVSLYKNLLEQDAVKIDSVKDASGDDIFWEVRHRKLLIYDSNKELITDATIGNHKLEIEYWVRISKAIKLSFPTDDDIESNPNIIEEWNEMIPVVEDTEVQLCALYLMITELAGIFPMEPGTVELYANKFSGAFQAVKTKYNSGNSPATITQVYF
Ga0302250_1001855	Ga0302250_10018558	F105254	MAEVATIYRLYGAAGTKYSLAGKTGRFCTQDSDPGLNNPCKIPPQGETYYSYRTTDCIGITGDFNQVRDIYIHCDGNFASEWGLDSGNGGGLFVGVRDAGDHGLPIDVVLHGSNQYAQATGTPGTTGHSIDNPTNGHPYYKDEPEKVRDFDTCLANSPLLIDSGPYTDDFYSKAWVLSLKIVPTATYGAKSPKSVIVTYNIF
Ga0302250_1004652	Ga0302250_10046521	F048337	MTLIEETVTFEGILRREEMPDTETARLQDYRIAAITKDATYTLVDALPYDFIVTNAFYRITEAFDGTLNLGTDAAPGRIIADADFVKTVGKRSVAKSIQLNAGKPIQLVLGPGTTGKIEVHV
Ga0302250_1005591	Ga0302250_10055912	F076867	MDEKNRNLVEIAKKKRYIALVEKLGRGSLSSKELKELEEFEKSEQRPAGVIDGTVDLPTLCVYLEKSPRMIRRYVQQGMPVFRDAAGEIARFKVGDVFKWFYVKQGSEEDNGKDYWDKEYRKNRAKLSEIELKQKEGEVIPFEDHVSIVKNQIRGIKAGFLRLPKHVAPKLYQQDPKVICEMLDLEIRYIIEQFAGKKNANKDGKGNS
Ga0302250_1010110	Ga0302250_10101101	F048337	MIEKNVTFEGILREDEEQNNETAMLEDYRIAAITKDATYTLVDALPYDFIVTNAFYRITEAFDGTLNLGTNAAPGRIIADADFVKTVGKRSTAKSIQIDAGKAIRLVLGPGTTGKI
Ga0302250_1011639	Ga0302250_10116397	F082739	MRKLLCILLVISAAIIGISAAEIQKDFRYTDVDFTPIDTNGTEDISDDILLPAVLGDLLPDGDGNGFFDVSYVLKKNGKVASTNPGQLYGVITVNNTTATTFTVTDVFGAQFNIHPAKLCGGVDIIRVDADGYATELSGTDQVVSATVDNDANTVSLEIALDEPLATDEELMIYCKFQTALKKMLPDTNPFVNEAMVNGEP
Ga0302250_1011678	Ga0302250_10116783	F086646	MDFIFRIQNHYFEKGSPWVELDKIKQRSWFLSVDIEDDGAVPCYDTVSELRLSKGVAFKSVKILTGKTQETHPYWEALLDMSYLNSTELRDVTFKDLPGESGIYMLNIWFDYDGEELNFGDDFKKLCEYRHKWDDGWICSKCGVRRADWIESDIKTTTREESY
Ga0302250_1011844	Ga0302250_10118444	F029455	MRQIDLDLWADGAADNLPKITVTAQGLRLEGEPAEFDRLCLILSGWIKQ
Ga0302250_1013900	Ga0302250_10139001	F065806	SGGAARNRVYFYGGYTQDNTAETDGASGKCLQFNPKNATYWIEQDFNVPVTSGVARTVSIKMKDDASFNGTVELELWYNGVCIVGPTTKTMTTSYVAQEMTATAGQIAADGVLTLKVKVYGTAGAVYADTLSYT
Ga0302250_1014881	Ga0302250_10148811	F070158	MADATYYQEGAAGLGKPDASSEKPSTEALSPNDAAPEANGTEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAEKAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPIDFVNGEVRKIMKRTGVYIEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVHGKHPSIRRGDVMGVT
Ga0302250_1017497	Ga0302250_10174973	F088355	MKNLTNKISVFVGRKGQLILAILTIALFVLAAGAPNATLGIGR
Ga0302250_1021402	Ga0302250_10214023	F086799	MKALKVSYSRLISKGNYENAKIEIELEVEPGEKAGEVFDAAKRWVDKRIVVEKLSDYKIKEAKIIISDKRNHTLAEIEEAEEILSKLKVEDDELPF
Ga0302250_1022079	Ga0302250_10220795	F088355	MKNLTNKINIFAGQKGQLILAILTIALFVLAAGAPNATIGIGR
Ga0302250_1022079	Ga0302250_10220797	F088355	RRKIMKNITNKISVFAGQKGQLVVAILTIALFVLAAGAPNATIGIGR
Ga0302250_1022212	Ga0302250_10222123	F097412	MSIYEEMNEDATSGGMYWKPQPGKINKVRILKDPIRREADQKINRPSYQFAVTGDDPKLPLVWSVSAKGALQQIVAIMKANGLTTLVGGVLQVAVAGDGMDRKYTIIPIELPTPANGAQVLLDFPAGSLEKALPKLFQPDIPAAPKGA
Ga0302250_1025028	Ga0302250_10250283	F101222	MNVWVAIAINIVVYLVSFAYAWGKLNTKISHIEKRYYELENEISDIADCSIRKEQYKSEQHNINRRIDELTSLDIDARLTKIETLLETILGEIKNGKYTK
Ga0302250_1025628	Ga0302250_10256282	F072819	MCRGIGVCIRRPDRTGGRASIRAGITIARGIVNVTRIHGEEMFQDQIKAQEVSFRIARLEGENAVGELVNWCRNNLDELTVQCFTHKRFMSVQALIDALCEVYRDLGVEGDKGNVSVFVLFLAGEHRDKIYASHVVELNDTHRQIIRDKLGLDIEEIEPGLSKLDWRADAGI
Ga0302250_1040445	Ga0302250_10404453	F023098	ELVESLRDINQKLDGMIVRQIEYAETSARIEERQENIERIVTNGLSHNVANIAKRLDVFCEEVKKRLDELEDFQWFRKPITAFRDGIFIATFKVAMIGALIYVLIHFGREFIQVVMK
Ga0302250_1042918	Ga0302250_10429181	F077341	GVKFVYGTTEMELPHCAGKLGFQELKNTWRTKSGNLKVQHKGFIPIITITMWNLGIWGASAFNMASLIQMLNAAKTDGIMIYPRYEYSNDLGYLCILNSDINPEDFSQNISAGQTLELSFIGKQKIDNMPTYTTLEGFYYMVDYYDNYLIDHNGNNLVLKG
Ga0302250_1051339	Ga0302250_10513391	F059033	MAITTANLQALAAAWGVGNEYQPIVVDLLKRSSLLQTATVAKASHGIKHKFRYFNSLPTAAFREIGEGIVPQKVDVNTAQIDLKELVFDLFDDYQAILQYPGGKEGWLKDNYTAALAALTNALAKAVFYGNVPSFGYEKAFKGFHQYAKDLGQVIAQKGATTAYRSSIFAVRWDEFDGASLRFNN
Ga0302250_1061806	Ga0302250_10618061	F072819	MCRGTGVCIRRRDRTGGRASIRAGITTARGIANVTLIHGEEMFQDQIKAQEVSFRIARLEGENAVSELVNWCRNNLDELTVQCFTHKRFMSVQAFIDALCEVYQELGVEGDKGNISAFVLFLAGKHRDKIYASHVVELNDTHRQ
Ga0302250_1068810	Ga0302250_10688101	F020914	MAIYQKYGFAIDQILSENQALPNATSGDSTNTIELQTVADDGLHIVVCAASTTVELASAATLEIRPTVGATDGAVTTVLPSILIKQGVQSDASWLPGEMICQFNIPAKLIGSARYLKLTYVTSADESADKVEAFSVRR
Ga0302250_1069706	Ga0302250_10697062	F026449	SISKSMMIPRRLGEGDEAYYTYVEEADDDANKGSA
Ga0302250_1076915	Ga0302250_10769151	F036769	IPLVIVTLLMVVPGPVQLPAAQPQDILTGNWVLKFEDGREGWASLVADNYPKTGFSSKGKAEVPGFKPVDLTSSVVPEYYREGQVILYNAQAQQRPFHFIRFFLGAKGAVTGYVATFDSKQYKFKAYRR
Ga0302250_1077035	Ga0302250_10770351	F080090	SVVSRTPWSEPLRVDKKLSNANSWRKTYEEDEAAL