3300028851: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Lys2 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300028851
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116197 | Gp0321334 | Ga0307347
• Sample Name: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Lys2 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 61609388
• Sequencing Scaffolds: 20
• Novel Protein Genes: 25
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Coleoptera → Polyphaga → Cucujiformia → Curculionoidea → Curculionidae → Entiminae → Celeuthetini → Syntrophus	1
Not Available	11
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin035	1
All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres → Fibrobacteria → Fibrobacterales → Fibrobacteraceae → Fibrobacter → unclassified Fibrobacter → Fibrobacter sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1
All Organisms → Viruses → environmental samples → uncultured virus	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae → Breznakibacter → Breznakibacter xylanolyticus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 44.11
  • Long. (^o): -88.23
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013091	Metagenome / Metatranscriptome	274	Y
F017318	Metagenome / Metatranscriptome	241	Y
F020196	Metagenome / Metatranscriptome	225	Y
F020363	Metagenome / Metatranscriptome	224	Y
F020914	Metagenome / Metatranscriptome	221	N
F021795	Metagenome / Metatranscriptome	217	Y
F022205	Metatranscriptome	215	Y
F031881	Metagenome / Metatranscriptome	181	Y
F034230	Metagenome / Metatranscriptome	175	Y
F035785	Metagenome / Metatranscriptome	171	Y
F045728	Metagenome / Metatranscriptome	152	Y
F047076	Metagenome / Metatranscriptome	150	N
F059998	Metagenome / Metatranscriptome	133	Y
F062800	Metagenome / Metatranscriptome	130	N
F070158	Metagenome / Metatranscriptome	123	N
F070167	Metagenome / Metatranscriptome	123	N
F080199	Metagenome / Metatranscriptome	115	N
F094051	Metagenome / Metatranscriptome	106	N
F101222	Metagenome / Metatranscriptome	102	N
F101223	Metagenome / Metatranscriptome	102	N
F103316	Metagenome / Metatranscriptome	101	N
F103500	Metagenome / Metatranscriptome	101	N
F105193	Metagenome / Metatranscriptome	100	Y
F105253	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0307347_101292	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Coleoptera → Polyphaga → Cucujiformia → Curculionoidea → Curculionidae → Entiminae → Celeuthetini → Syntrophus	3223
Ga0307347_104207	Not Available	1885
Ga0307347_106303	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin035	1530
Ga0307347_106353	All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres → Fibrobacteria → Fibrobacterales → Fibrobacteraceae → Fibrobacter → unclassified Fibrobacter → Fibrobacter sp.	1524
Ga0307347_110024	Not Available	1190
Ga0307347_110604	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1152
Ga0307347_111796	Not Available	1079
Ga0307347_115098	All Organisms → Viruses → environmental samples → uncultured virus	928
Ga0307347_115179	Not Available	925
Ga0307347_117404	Not Available	852
Ga0307347_117718	Not Available	843
Ga0307347_118194	Not Available	829
Ga0307347_119045	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	806
Ga0307347_119971	Not Available	781
Ga0307347_122082	Not Available	731
Ga0307347_123748	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104	697
Ga0307347_126435	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae → Breznakibacter → Breznakibacter xylanolyticus	652
Ga0307347_130723	Not Available	592
Ga0307347_132943	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	567
Ga0307347_138835	Not Available	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307347_101292	Ga0307347_1012921	F021795	MKKEADRVRRWREKKKAEGKSSFTVVLSRDAREFLAAEKEKTGESYAAIMEKALSSLKRQAYAPPVLRHFPRREEALARAAAAPPAGRVGHDGNRQPRILIDDLANYPSLEDIEREQAAKEQSGIYDPRSGEGLITRLLRSSTGPFSRKKKWFR
Ga0307347_104207	Ga0307347_1042073	F020196	NRTESRRDPVSGRHQSWPRQGERTGHHRGLRAGHAFRGVIRELGRTSRLLGRARRSTGDRHKQHPGVCRWMRAVNEPNPARAGRDTKPSASTQGTGREPKANQPGRTKVVVATHSTAGPGAARRLDRKRGELRPKGPTIKAARRREGEAGHDLWAREIQE
Ga0307347_106303	Ga0307347_1063031	F031881	MKNFEFKINKKITPIRTGENKFKFAIDKSGITNINITQDKIEDVIYSIFDDSEYMDVVKVITNVKGKQKIPKIFLQGAQYSGNGLIPSSGCGFVDTTDLVLKEVDIEVEKLRMGMELCLDDLVNYSFEVHITDGARNEDLDISDALLAYFTQVLRANIQDYLFNDSTNGIIPKLQAGASAATVTAASELGKLLDIYNSLPEGWQNSTKANPIIFISPNLFTSIRGEIFSATAPITSSIEIINNRFKLPLTNASVITLPFLTGMKAYAGISNYLFAGTDLESDFENVRVWYSDDNETIRFSALLYLGSAIADIGDFVKYEPLIIP
Ga0307347_106303	Ga0307347_1063032	F013091	MSCKLTNGISLKDCDTPGGVSESYFINIEDVDTMTVTDFQVSALTLKSYTTAYKIAFEPQTSNFSSNAVGSVENSSAAFEQTCEIKINKIDNNVLEQVDALTKGRHMVIVKKADNTYELYFHEGGAKFLANYTTGTAFEDPSGVTLTATHRQ
Ga0307347_106353	Ga0307347_1063532	F020363	MCCWRRVAVARVFALVMRCRVMRLVVNSRVGKNRDTRRESPAGAGAGRTADHLTILFSQKVLAVRKGNDLYRPVMGRYFFMIL
Ga0307347_110024	Ga0307347_1100242	F070167	MSWLGNALFGQSRLKGYNMTPQQLTQAYTPKTYSVDTSRYTALGEEFLDPYSSRNRGMYNDLKKVGVDAAAQQYLNSMRMQAAGQNPFATGQLQSSLASNLEGTRQAYNSYLNNAYQTGTGLLGYSLQGNLANAAAQNTAAMQGSQSALNYQLQKMQADAAMQMQRSQNKSGFFGGLFGNLVGASPALLFGTQSQAGLLKLLGLW
Ga0307347_110604	Ga0307347_1106041	F034230	AMEAAMRRWMILAMLSGFILSGTAAPAQGDASGPETNKLRVTVGPFFTQESDKKIPLESAASRVIRKGKRVNITVTVENYGKEKSEPVRLRYMETDGKAAEPRLYRVESIEPGKKWQRTFMARWETSGRKSVTATLVTPEDKPLVDATGKPRPDTSHTGSVSLTVKRM
Ga0307347_111796	Ga0307347_1117961	F062800	TRVFSTVTNRRKGKKGKGSKGKRRTNQLQAVSSGAIARPFPATFRVRQTFSNGETFTSSSKVVRGLSEFLAKPPMYYNYMYGIYKYARVLAVELEVLWNSTGTDSMRVAIGRVPYSDISGITYSQFSEMPETQIALLSAKGGMDKVVQTRTFVARNAIGQALTDHSYWVNSAQAISTTPLHTDDYALLIMSDGVTLASTASATIRVHYHIEWFDLQYAV
Ga0307347_115098	Ga0307347_1150981	F017318	MFSPLQAKPLKFERTVEGLYDISCDGINPSVGTWNFSLNDLPSYTEFTVLFDMYKIDRIEIEWYPEYTVLSDGGVTSPAVDVQFNSAIDPVGNTVTNVSDVLQYRTLKGTAINKIHKRSLVPAYLMDGIVPCACYISCTSPSSNLWGVVYGIAPTGTAMLFKSRAKFYLSFVQSR
Ga0307347_115179	Ga0307347_1151791	F062800	FTTLPRRKRNRNKNRGKGAQLQSVTSGAIARPMPAKFRVRMTYQNSEVFGTSTKVVRGLSEFLAKPPMYYNYLFGIYKYCRVLAVELEVHWVSTGSDASRVCIGRVPYSDTSGITYAQFCEMPESQTAVLPAKGGIDKLTQTKLVRPRNALGMQLDDHSYWVNSAQAISATPLHNDDYVLLIMSDGIGVTSASQAIIKLHYHVEWFDLQYAV
Ga0307347_117404	Ga0307347_1174041	F101223	MTEVTQEDLETLKSELNEIIETRLDSFIDEFIATWNELENKESEGENCCSCESDNSDTENPARYLIFAGGNKFFATDIKPNAMVGIDFYLHEVDPATGKEYNSQGTITNADVVILDLQPEMDLETFSSIKRNTIDYAIKQAEEAHAKAKAVKAENSKIPID
Ga0307347_117718	Ga0307347_1177181	F103316	HRIIGLIAAFAVAFFTLPTLTPSPDHISVETKTKTQVTTQELQKSPDQSSNKTLNQADQMTDLKTLIADLDQQVKQANDLTEAINLIISGLLALLSYLIGNKLSAWLQKLFNKKRYKV
Ga0307347_118194	Ga0307347_1181941	F047076	RLLTQILKPKIVNQYEDPNNFRKLDIVKIDSVKDTSRDDVYWEVRHGKLLIYDSNKELITNETIGNHNLEIEHWVRISKAIKLSFPTDDDIESNPNIIEEWNEMIPGVEDTEVQLCALYLMITELAGIFPLEPGTVELYANKFSGAFQAVKTKYNSGNSPATITQVYF
Ga0307347_119045	Ga0307347_1190451	F094051	LERTSLASPAIGPTMTYAKLKGTIPLLGPVPVQSQLDEFEHAVGGGGKPSGFDIEVLKDRVVLYVSDEAEIESDVGNPMSLQQQAAAGALAANLNKLIAERLNTTPQVYGTGGDLGNWTSVKPTLAVGKMAAAMGVHQPTALVMGTLAGAYYVDAVGDKVAIANLTEWRGAVSIHPTLNIPVFISTDIDKLDDTSGNRYVFGVCNTTPGVVTVLSKIKARQYDDPKLGAQVYQYDIWRSPFSNIQQTSGNLNLGVMRGIMKES
Ga0307347_119971	Ga0307347_1199712	F101222	MNVWVAIAINIVVYLVSFAYAWGKLNTKIADIEKRYYELEGKMSDIMECSVQKEQYKSEQHNINRRIDELTSLDIDARLTKIETLLETILGEVKNGKYIK
Ga0307347_122082	Ga0307347_1220823	F035785	SEMEPRTIEAETAKKMSENELMDAVWEAPENSVLEIFAADPNPQAGDNDGVYLEIIKLDDEESVVRDRWPNLDGDRHIVSTSDIYAIYRALVDQVEEVA
Ga0307347_123748	Ga0307347_1237481	F070158	AQKMADATYYQEGATGLGKLDASSEKPSTEASSPSDAAPEANGNEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAERAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPNDFVNGEVRKIMKRTGVYLEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVHGKHPSIR
Ga0307347_126435	Ga0307347_1264351	F045728	MQLASAPRESSSQNERPSMAVQAAPAPAGDSRLVSR
Ga0307347_128903	Ga0307347_1289032	F020914	MAIYQKYGFAIDQILSENQALPSATSEDSANTIKLDAVADDGLHIVVCAASTTVELASDATLEIRPTVGLTANAVTTVLPSILIKGGVQTDDSWDSGEMICQFNIPAKLIGSARYLKLTYVTSADESAEKVEAFSVRR
Ga0307347_130723	Ga0307347_1307232	F080199	MKIIVQGVEETNLKLSQILAAVQENVDNTLDLFSADMTKEIKDSAPYDTGRYMSSWFYERKESMKYAIVSQNSYVPYNIYLVFGTEKFKPIANESKYKYSDPERGIIHDVRQIKFIYSIKLGQLIKRMNLLSANISLAGL
Ga0307347_132943	Ga0307347_1329431	F059998	NTTMDDLEFISDLALLELAKLNPTLSGQPLTEKAKKYFLHEIRSRRWELGRGRQVTPLTETGAIVSDAHGWPVSFQDVIREIAGEMFELPEKKTTVGVMTQDEYISAMRAATTPEQQIEVMNAWTEQQKRK
Ga0307347_137655	Ga0307347_1376552	F105193	MAPLTLTLNYVAPAALLEATARGQPRTILLVINWQEQTIRAETKDPEDNTTPETRWRGLEDAYPLPPLVDATELREWVEEEVLPRALPLLEAYETVWEDVDQFGRFPGHEDEKAEFDHWMAMH
Ga0307347_137709	Ga0307347_1377092	F103500	KSEVERMPRETKQALIVVAHLLPDDEPLLLFQIETWLSMQDDGGSWWEVPAYLSLMGISLPEVVKASERAKKRILKVVTAI
Ga0307347_137818	Ga0307347_1378181	F105253	MKKIIFLLVFISLVGYLIGQYVPVEIVNNAEDYLGRQLVTRFRDEIRKSPSYTVTYSSDEPHFKVKIDTMDRYKGDSLYEGISTIYNYTILIAVNGIDIYCYSQLGYAGKDVLNEVAFQIYSDLDEFIETFKSYLIQLLEEYE
Ga0307347_138835	Ga0307347_1388351	F022205	RNRNNKRFLLPYNKFFTATTGAATVTANVMGLPPNRPCRPHAIEVRYAHSAPAGVRFRIYAGNSEEVYVSPALVAGQAPQVFRATLPANTDFALYDSAATVMDFAGSATWAIRLTMAHKENMA