3300028737: Freshwater microbial communities from Lake Matano, South Sulawesi, Indonesia - Watercolumn_Matano_2014_100_MG

Overview

Basic Information

• IMG/M Taxon OID: 3300028737
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127566 | Gp0272222 | Ga0233419
• Sample Name: Freshwater microbial communities from Lake Matano, South Sulawesi, Indonesia - Watercolumn_Matano_2014_100_MG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Restricted

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Dataset Contents

• Total Genome Size: 454035341
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Indonesia: South Sulawesi
• Coordinates
  • Lat. (^o): -2.4667
  • Long. (^o): 121.2833
  • Alt. (m): N/A
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002525	Metagenome / Metatranscriptome	552	Y
F006504	Metagenome	371	N
F019160	Metagenome	231	Y
F045455	Metagenome / Metatranscriptome	153	Y
F081864	Metagenome	114	Y
F086602	Metagenome / Metatranscriptome	110	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233419_10051991	Not Available	954
Ga0233419_10052056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	953
Ga0233419_10075169	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	813
Ga0233419_10198537	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	528
Ga0233419_10208316	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	517
Ga0233419_10209266	Not Available	516

Sequences

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold ID	Protein ID	Family	Sequence
Ga0233419_10051991	Ga0233419_100519911	F086602	LTQGLLALVTELLKHRGPQQRRLRLFFDKGGYQGAIFRALAAQPEVDFYTPAVRYVDNVAAWEALPATAFDPAAFIYAKDANRPADQQPTYRLADTEMTLNVREGKAHKVVDTVTLRAIVLHDPRGPKPAERWPMVLLTDDRISDARTLLNEYGDHWGQEFAHRIGRHDLALDILPPGYVLTTTRDAQGALHRTVKDDQTAFFLTAWLRCLVFNLLTRFADALGGAHTKLWAGTLLRKFIRRPATLDLVGPELHVVFDPFPEQAALQPLLDRLNAKRTALPWLNNLVVQFRIAQDERVYPLTEPAKRKRLFGPG
Ga0233419_10052056	Ga0233419_100520562	F002525	VWAGVDSAWEQEKPEARKMPENAAESHTSGARFVSP
Ga0233419_10075169	Ga0233419_100751691	F081864	MEADTRQYLARNNRQPRGFGRWGFLVGNETFFFVGQYSNSRKEAFKVAQAQGEEWVVVLPEKKLAPQGGNPERPENMTQNQINSIKNRLMAQAETRTINKRTRTVIPVKGMKAAEVMMVFDIQSKRTAHAIVKRGYHIVDYMEARQCPGTMEDAEEAYRVAKWWFYKKLGGQAPHGLDADDMIQEAVTRLVELAGDPRMQEDSYKFYVVRSTMAEYLRRNQKHEHLDEEEIEAPGSRRGVWLRQREP
Ga0233419_10198537	Ga0233419_101985371	F045455	SRVGDSSCQELNRSVWERAWQLLSPTLEVVAVYYRQRFCLLTLAEYGRILLEVAEPVRGKLRDRLRQIERQQYSLLENARPP
Ga0233419_10208316	Ga0233419_102083162	F019160	MRVYLYYENVERPLAVEIPDNELEGFLREYEEALHDTSVESFQWKNSSFRIGGLLAIVQQRHASLS
Ga0233419_10209266	Ga0233419_102092662	F006504	MPRTLKWGQTYTVMLDVGAVADAFILDSSTLDGTDTLDGSTDFYDATEYVLDVAIQRGRQNQTTQFSPGTVRLTFDDRASGRLFDPTNSASELYAGDFDLAPGRQVK