Sample 3300028727

Basic Information
IMG/M Taxon OID	3300028727 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0116197 \| Gp0321331 \| Ga0307344
Sample Name	Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Arg1 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Arg1 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	50926476
Sequencing Scaffolds	25
Novel Protein Genes	31
Associated Families	30

Dataset Contents

Total Genome Size

50926476

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	14
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leucobacter → unclassified Leucobacter → Leucobacter sp.	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin141	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	1
All Organisms → cellular organisms → Bacteria → Thermotogae → unclassified Thermotogae → Thermotogota bacterium ADurb.Bin062	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leucobacter → unclassified Leucobacter → Leucobacter sp.

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin141

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.

All Organisms → cellular organisms → Bacteria → Thermotogae → unclassified Thermotogae → Thermotogota bacterium ADurb.Bin062

Ecosystem Assignment (GOLD)
Name	Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
Type	Engineered
Taxonomy	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Ecosystem Assignment (GOLD)

Name

Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Type

Engineered

Taxonomy

Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wisconsin
Coordinates	Lat. (^o)	44.11	Long. (^o)	-88.23	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Wisconsin

Coordinates

Lat. (^o)

44.11

Long. (^o)

-88.23

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004383	Metagenome / Metatranscriptome	440	Y
F010686	Metagenome / Metatranscriptome	300	Y
F020914	Metagenome / Metatranscriptome	221	N
F028541	Metagenome / Metatranscriptome	191	Y
F029768	Metagenome / Metatranscriptome	187	N
F052619	Metagenome / Metatranscriptome	142	Y
F059033	Metagenome / Metatranscriptome	134	N
F062800	Metagenome / Metatranscriptome	130	N
F064746	Metagenome / Metatranscriptome	128	N
F067770	Metagenome / Metatranscriptome	125	N
F067893	Metagenome / Metatranscriptome	125	Y
F070165	Metagenome / Metatranscriptome	123	N
F070167	Metagenome / Metatranscriptome	123	N
F072475	Metagenome / Metatranscriptome	121	N
F074914	Metagenome / Metatranscriptome	119	N
F078879	Metagenome / Metatranscriptome	116	N
F081379	Metagenome / Metatranscriptome	114	N
F084407	Metagenome / Metatranscriptome	112	N
F089689	Metagenome / Metatranscriptome	108	Y
F093911	Metagenome / Metatranscriptome	106	N
F094051	Metagenome / Metatranscriptome	106	N
F098317	Metagenome / Metatranscriptome	104	Y
F099361	Metagenome / Metatranscriptome	103	Y
F101223	Metagenome / Metatranscriptome	102	N
F101424	Metagenome / Metatranscriptome	102	Y
F103315	Metagenome / Metatranscriptome	101	N
F103495	Metagenome / Metatranscriptome	101	N
F103501	Metagenome / Metatranscriptome	101	Y
F105253	Metagenome / Metatranscriptome	100	N
F105431	Metagenome / Metatranscriptome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0307344_100891	Not Available	3166	Open in IMG/M
Ga0307344_101690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leucobacter → unclassified Leucobacter → Leucobacter sp.	2457	Open in IMG/M
Ga0307344_102163	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	2199	Open in IMG/M
Ga0307344_103471	All Organisms → Viruses → Predicted Viral	1791	Open in IMG/M
Ga0307344_103744	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	1732	Open in IMG/M
Ga0307344_105300	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	1463	Open in IMG/M
Ga0307344_110448	Not Available	1021	Open in IMG/M
Ga0307344_112934	Not Available	900	Open in IMG/M
Ga0307344_113050	Not Available	896	Open in IMG/M
Ga0307344_113318	Not Available	887	Open in IMG/M
Ga0307344_113328	Not Available	887	Open in IMG/M
Ga0307344_114405	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217	847	Open in IMG/M
Ga0307344_117628	Not Available	751	Open in IMG/M
Ga0307344_119349	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	708	Open in IMG/M
Ga0307344_119528	Not Available	704	Open in IMG/M
Ga0307344_119873	Not Available	696	Open in IMG/M
Ga0307344_120053	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin141	693	Open in IMG/M
Ga0307344_121931	Not Available	656	Open in IMG/M
Ga0307344_122244	Not Available	650	Open in IMG/M
Ga0307344_125989	Not Available	589	Open in IMG/M
Ga0307344_126107	Not Available	587	Open in IMG/M
Ga0307344_126364	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	584	Open in IMG/M
Ga0307344_126975	Not Available	576	Open in IMG/M
Ga0307344_127682	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	567	Open in IMG/M
Ga0307344_128687	All Organisms → cellular organisms → Bacteria → Thermotogae → unclassified Thermotogae → Thermotogota bacterium ADurb.Bin062	555	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307344_100891	Ga0307344_1008913	F072475	MSESFASRFMMPEEKQAMVARDPQSAQALHNGPRTGFAHNCYAGGLGMFFQKTIKNTILEKFLDQAWQGFLKYRCAGSKAAYREAKKNPDAVFQYDDPLLACLNHVLKESISKHHTDADARRKQALMRQATDITLTLLNEDIYYRARCKEHLRDILAAVAEHPEYLDLSLEEEQNIRRWNGCSP
Ga0307344_100891	Ga0307344_1008915	F084407	MPTSGNVLALLPVLTPYTATSAQFDLLYPYALDEFEGDDPGCSKTGAERALAYLMAHYLAGGEDQIGFSGEKIDDYSYRVAGPAATSSRWYVLYRQQLDRCRDALAIGPAALAGVQHADVSGLSDLHLDQNPVVRVRRDSDESP
Ga0307344_101690	Ga0307344_1016903	F067770	MIEFKYNSPVFKLGKISRSEWRELGMSARSEIVKRTRNGIDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRARVALLHQTGGFHLPKREHFGFNKTDGGRYLERIAKLQTVKNKKANK
Ga0307344_102163	Ga0307344_1021631	F094051	MANTGVLGKVQIEGNWTQKRLILPVIQAALERTSLASPAIGPTMTYAKLKGTIPLLGPVPVQSQLDEFEHAVGGGGKPSGFDIEVLKDRVVLYVSDEAEIESDVGNPMSLQQQAAAGALAANLNKLIAERLNTTPQVYGTGGDLGNWTSVKPTLAVGKMAAAMGVHQPTALVMGTLAGAYYVDAVGDKVAIANLAEWRGATSIHPTLNIPVFISTDVDKLDDTSGNRFVFGVCNATPGVVTVISKIKARQYDDPNLGAQVYQYDIWRSPFSNIQQTSGNLNLGVMR
Ga0307344_103471	Ga0307344_1034712	F103495	MIYMDNLLQFLIDSGLLYMIFSTLLTVGIGFIVGKGVSFKEIQDIIKVVDESYKDGYISPEEAQKIYEEITDVIGQDWYIRLFKLFKR
Ga0307344_103744	Ga0307344_1037444	F081379	MKLTTLGAADALGTPIPVFIPDTYRTRLVTTTTGVVTTPSFDSSEEARPYVKITATQEAEERTDLYLYALGNVYEANHIQLHITVGNASESYSIERKEVDLILTINLKTEFQTIAKIVYYIGLINNALGKTIISCSFDANKSSYSISSAVRTYFNSYRPGRCANLVRILTFDDGVFIGNFPESGDPWKDSNTIVPLASMPLVAGVETYIMLSPNEMLSVSGGGTAGKKVYITPQRNY
Ga0307344_103803	Ga0307344_1038033	F020914	MAIYQKYGFAIDQILSEDQALPTYAQPGDSTNTIKLDAVADDGLHIVVCAASTTVELASGATLEIRPTVGLTANAVTTVLPSILIKGGVQTDDSWDSGEMICQFNIPAKLIGSARYLKLTYVTSANESDDKVEAFSVR
Ga0307344_105300	Ga0307344_1053003	F070167	MSWLGNALFGQSRLKGYNMTPQQLTQAYTPKTYSVDTSRYTALGEEFLDPYSSRNRGMYNDLKKVGVDAAAQQYLNSMRMQAAGQNPFATGQLQSSLASNLEGTRQAYNSYLNNAYQTGTGLLGYSLQGNLANAAAQNTAAMQGSQSALNYQLQKMQADAAMQMQRSQNQSGFFGGLFGNLVGASPALLFGTQSQAGLLKLLGLW
Ga0307344_110448	Ga0307344_1104481	F062800	NQTRVFSTVTNRRKGKKGKGSKGKRRTNQLQAVSSGAIARPFPATFRVRQTFSNGETFTSSSKVVRGLSEFLAKPPMYYNYMYGIYKYARVLAVELEVLWNSTGTDSMRVAIGRVPYSDISGITYSQFSEMPETQIALLSAKGGMDKVVQTRTFVARNAIGQALTDHSYWVNSAQAISTTPLHTDDYALLIMSDGVSLASTASATIRVHYHIEWFDLQYAV
Ga0307344_112934	Ga0307344_1129341	F062800	GAIARPMPAKFRVRMTYQNSEVFGTSTKVVRGLSEFLAKPPMYYNYLFGIYKYCRVLAVELEVHWVSTGSDASRVCIGRVPYSDTSGITYAQFCEMPESQTAVLPAKGGIDKLTQTKLVRPRNALGMQLDDHSYWVNSAQAISATPLHNDDYVLLIMSDGIGVTSASQAIIKLHYHVEWFDLQYAV
Ga0307344_113050	Ga0307344_1130502	F101223	MTEVTQEDLETLKSELNEIIETRLDSFIDEFVATWNELENKESESEGCRSCESDNSDTENPARYLIFAGGNKFFATDIKPNAMVGIDFYLHEVDPATGKEYNSQGTITNADVVVLDLQPEMDLETFSLIKRNTLDYVIKQAQE
Ga0307344_113318	Ga0307344_1133181	F099361	MNIKNTDSISILIANSGNQKKYHPVSELKEDILADVEADAAFQDIIIQGILGNVAAPDLATKSTITEEDVDPAIAIDVTKNTFADTLSEDVDNWIIDFGATDLILNTITKVSGTKIEIATTGTAKEGTIRILALKDCFDAPIVDSTVLEIEVQESGE
Ga0307344_113328	Ga0307344_1133281	F052619	INKKERAASRRVSQKKSPTKQLTSQVMKSPVYRPVYKFTRVSEDASFNIVCDGINPTLSAFIFMLSQVPNSTDFTNLFDMYCLKKIEIDWVPEYTELTDAAPLSNAVNVRVNSAIDLTDNLAPASVNEVLQFQQLVSTGITKPHKRSWQPTFLMGGLVPCSCWLPTSSSTERHYGLKIGVPPTGVAMTLRAKVKYFVECANVN
Ga0307344_114405	Ga0307344_1144051	F093911	RVLGDFMRLYDAYKNGEITRTEYLAYLDFGYKPSDSVFLTQNKSTEMVTISYLSMGNNYNWSIDDGESMMAYVGPINDLSNAGSLNNAGSILFLYKDGKIVNTGTITNTGHIALQSI
Ga0307344_117628	Ga0307344_1176281	F070165	MGGPTSISASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSAPGSTVFTFQPMLDLNVSVKVGCLTTFEYKYPTGAHGDLRYEPAVIEVV
Ga0307344_119349	Ga0307344_1193491	F010686	ATKGAWGMSWHQKAKKGVEVCEKPGGADKRATIPGFPN
Ga0307344_119528	Ga0307344_1195281	F067893	TVYPRYTMAERLVLAVIAVVTWPVERFLGWVRRKVAIDMAPSADHR
Ga0307344_119873	Ga0307344_1198731	F059033	MPITTANLQTLAAAWGVGNEYQPIVVDLLKRSSLLQTATVAKASHGIKHKFRYFNSLPTAAFREIGEGIVPQKVDVNTAQIDLKELVFDLFDDYQAILQYPGGKEGWLKDNYTAALAALTNALAKAVFYGNIPSFGYEKAFKGFHQYAKDLGQVVAQKGGSSGSCSSIFAVRWDEFDGASLRFNNTELLQVIDMTPNQPIPIVTD
Ga0307344_120053	Ga0307344_1200532	F105431	MDNDSTIKLIEKYGMHNRGKSKLISHLKGEHITRKEAIYAYCYDCQGYCEDGKAECDQTQCPLYA
Ga0307344_120380	Ga0307344_1203802	F089689	YWEVEEEISQYFGDAEADPICPYHIIYLPKLSNPVKNAGIQ
Ga0307344_121931	Ga0307344_1219312	F103501	MIKNIVFEGVVSYDVEYDLWCVGEDYIENIISDFEDKKVLVTITVI
Ga0307344_121931	Ga0307344_1219313	F078879	TPDVSDEVKEGYDLLEGIGIVERTESGQYYPTEVGAAIIYAVLCKQMFGTDADDFESEESQQVMMNRLEEMDLVEQGDESFIITIEGFTAFFTNLAYDCPYREEFLDWLALATAELAEEMEKL
Ga0307344_122244	Ga0307344_1222441	F101424	MNYIEGLKIIGWIVIIIVCIAFLFIWYAAFCYVAYVLLGMIGITGLWQTICGIVIGLFVASLPTMFKKRN
Ga0307344_125989	Ga0307344_1259891	F004383	AALMACDCENPCRECKGNGSECSMDPAECGHAVLPSSDNLLERAFMARIRADEYREALAALQREFDERPDVIEIKRLIDRCEEERRTCIEQAKAAGISKQGSFLLKIRTRKQRTVIPKLFFAKHGAEAFVERATIAIGKAETLLGKAALDDCCEVEVKEIGVSVEYVRLEGSE
Ga0307344_126107	Ga0307344_1261072	F098317	QRGVSEMARALRLGLTLSEEDAKVFWQSEEAYAVTPQQKLQLKEAQRIYQSHPIKF
Ga0307344_126364	Ga0307344_1263641	F028541	REQQGAFMNERERLKLINRLKTARTSEERDQILWYLAGQDKAARGKAQRAEPTGTGKPAPGSVPEKHPLGLPGGKLGGMGSITSLLFLFYGLVTIAAAAVKIVQGQMEGDEIKQLIMGGMFLVVGVVLFAKSRRAQRKAAEEA
Ga0307344_126975	Ga0307344_1269751	F103315	MITVEIYIFLAAVVAAAFIYIFLDLDNRLYGNLFAAAFAGILSGLLALWSFNENTVTITTVPQTAIAVQHYLNDTTTYAYQTHIVPIVDPALGYFWMLVMVFMWFLVGYFV
Ga0307344_127682	Ga0307344_1276821	F064746	NKIIWMALILLLGVFAIGGMSSTNGNDSAKNVTIDGYTFEGDFDDKWTNGYGDTETYKPANLEDIQFGIPDGAYDWTGAENYNAFRYRSGEPSGSITKYGWAHIFVLKPDDDLSYSSSIEMLRHAAYMIINPKDHRNAVIGGDLTEKEIEYNGRQAYYIEVQGELITSEDYPAFINDNSQGAIAFFLDD
Ga0307344_128687	Ga0307344_1286872	F074914	EMKISTLVKKSCAALHRVELLDPQECDREVFKMEIERARAIAYLVKTVSEIIAKNEMENRIAALEAAILQEKAS
Ga0307344_131254	Ga0307344_1312541	F105253	LLVFISLVGYLIGQYVPVEIVNNAEDYLGRQLVTRFRDEIRKSPSYTVTYSSDEPHFKVKIDTMDRYKGDSLYEGISTIYNYTILIAVNGIDIYCYSQLGYAGKDVLNEVAFQIYSDLDEFIETFKSYLIKLLEEYE
Ga0307344_133075	Ga0307344_1330751	F029768	LKMLDSVLKEQAKETVIPALNAIYSEQELNKDSQISVRLERGLYQALEAQTERFGFKNVSQTLRAILTFYFLPVAYELELKNKSVSDFKRFIELKQREGYSLEQAKANYFLFQTVEYLEFLEQAKVMSNHSLQFMERATEKMNGILQETESKIEQAIKEIAQEQEK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300028727: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Arg1 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences