3300028668: Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_120m (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300028668
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0297567 | Ga0257140
• Sample Name: Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_120m (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 153319026
• Sequencing Scaffolds: 16
• Novel Protein Genes: 18
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Caldalkalibacillus → Caldalkalibacillus thermarum → Caldalkalibacillus thermarum TA2.A1	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → lake → saline water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Canada: British Columbia
• Coordinates
  • Lat. (^o): 49.68
  • Long. (^o): -124.009
  • Alt. (m): N/A
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001679	Metagenome / Metatranscriptome	653	Y
F004178	Metagenome / Metatranscriptome	449	Y
F028081	Metagenome / Metatranscriptome	192	Y
F033261	Metagenome / Metatranscriptome	178	Y
F046170	Metagenome / Metatranscriptome	151	Y
F056324	Metagenome / Metatranscriptome	137	Y
F064398	Metagenome / Metatranscriptome	128	Y
F065253	Metagenome / Metatranscriptome	128	Y
F071959	Metagenome / Metatranscriptome	121	Y
F080857	Metagenome / Metatranscriptome	114	Y
F083597	Metagenome / Metatranscriptome	112	N
F088317	Metagenome / Metatranscriptome	109	Y
F091295	Metagenome / Metatranscriptome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0257140_1008951	Not Available	1950
Ga0257140_1017246	Not Available	1403
Ga0257140_1028917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Caldalkalibacillus → Caldalkalibacillus thermarum → Caldalkalibacillus thermarum TA2.A1	1046
Ga0257140_1037021	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	902
Ga0257140_1038756	Not Available	878
Ga0257140_1041403	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	844
Ga0257140_1043773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	817
Ga0257140_1044894	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	804
Ga0257140_1045082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	803
Ga0257140_1049857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	756
Ga0257140_1050342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	751
Ga0257140_1059942	Not Available	677
Ga0257140_1074200	Not Available	597
Ga0257140_1083173	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	558
Ga0257140_1093520	All Organisms → cellular organisms → Bacteria	521
Ga0257140_1094174	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	519

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0257140_1008951	Ga0257140_10089513	F071959	MASRNYLINSNDMTLTDKKEYRTKALAAGLERCGQKNIGNVNADIPVLAGIPPANMEARVAEIKAHIETGKWPKTIDQRELAPLTDFVAAAAQDFWLTVALAAVGTVYTCLGLLPAYTFPAGRLMVCYGVSVDAAVLPVSRLIFRRGSAVGNIQAQFDMQPLGPRLETAAFFSEPVVIDPQDPFAIQVLCNIIAGATPVHIDNFLFEIGGAVIA
Ga0257140_1008951	Ga0257140_10089514	F046170	MIRIEDFGEIAYGGAVTLTEWWDNKRIDQGKIGTKDVFKKASFYTYLGVGLAATLISVFGWMRRYERWSEHVSHGFLYDLPRFAYNLTKAMGSSSKRGSGAESRAVQEAQKILQERMSAKALTQGRTAERSYQREFESVAPHAF
Ga0257140_1017246	Ga0257140_10172463	F046170	MIRIEDFGEIGYGGVVTLTEWWDNKRIDQGKIGTKDIFKKASFYTYLGVGLAATLMSVFGWMRRYERWSEHVSHGFLYDLPRFAYNLTKALGTTSKRGSESSAVQEAQRILNERMRAKALTQGSGIPAERSYQQEFETVAPHAF
Ga0257140_1028917	Ga0257140_10289172	F001679	MSRRQESTKGVVGCDKLREAVKRALIRRSPNHLLLNS
Ga0257140_1037021	Ga0257140_10370212	F064398	VKTVTLKKLCVMALCTFLLTLTFSGVGNAAPEETPSVYYLEYGGLKIDIRAPDQAYPGENITVTVKTEAVVPQIYVKYINVDLYGVVNATTEVILDQISHLKNSSLSSHEVQYNIKIPDNISPGLTYGEVSCEWEALGASFEILSSGFVLTYVKNVALEQLQAEYDELNATHQSILQENTELKSGINEDADSTRNLMYVFIATTVVASITVFVLLMRKPKKVWV
Ga0257140_1038756	Ga0257140_10387563	F091295	MTSRKEYQASLRSLDRDIQICISYLEETLNDRFKTTLVAQEHKPQKVDLSKIGSKMDSLQKQIDGLRPKVDAAYSFVQEHDDQEKYLKSLTKRIEEALDEVKQLFKEMYDKGVFRFTYSGKIQEEGLIDQLKAGK
Ga0257140_1041403	Ga0257140_10414032	F028081	VFRMDQEEALQKLQKTRKENEEAYLKAKAFLDGFRARGQLSQKDSEFLFLMEFVIKGFKNHGNDIITAFENQVRYTEALNTLHIKVNDLEKEIRQLRITLDKMYQDR
Ga0257140_1043773	Ga0257140_10437731	F088317	MPGPEDKVNYPPTPKIPQEELNKTAPKTRKDHYEGIKAPPIPPLEKSQILKAIESGFKVAEESSRYVMTPPPELPYRILSLRTKYVSCNTRHLKEIGAFRTLAPELFGDAGYKLVDDVYASFAYSEFRSAQARGQLKNAPNCTAREIGTYIATAYDIQNFPVTVAEATDERVRIQLYKGLPVYCPYDVRRGDYRLCAATAGYERELTKLCNPKLRAYLSRTKAIGDDCC
Ga0257140_1044894	Ga0257140_10448942	F004178	MRPTAPHAAESSVGKHTARESEAPNVCEWERARGERPPP
Ga0257140_1045082	Ga0257140_10450821	F088317	MAGPEDNVKYPERPKLTSADVNKAAPKTRRDHYKGAQTPPMPEMDKSQIMEWVETGKPEDPSRYVMMPPREVPYRKLPLAVKFVSCNTRHLKEIGAFRTMLPEIFGDAGYKAVDDAYASFADGEFRTAQSRGMLKNAPNCSLQEIAAHICTVYDIQNFPIVIAEADYDNEIVRIQLYKGLPRHCPYDVREGDYRLCAATAGYERELVKMCNPKYRAYLSRTKAIGDDCCELTIEADPDYK
Ga0257140_1049857	Ga0257140_10498571	F088317	MPGPEDNVKYPPPPNIPQEELNKTAPKTRTDCYKGVEVPPMPPLEKSQLLRSIESGFKEAEDASRYVMEPPRELPYRVLPLLTKFVSTNTRHLKEIGAFRTLVPELFGDAGYKVVDDAYASFAFGEFKTAQSRGQLKNAPNCTAQEIGTFIATVYDIQNFPIVIAEASKDKVRIQLYKGLPTYCPYDVRRGDYRLCAATAAYERELTKLCNPKYRAYLSRTKAIGDDCCELTIELDPDYK
Ga0257140_1050342	Ga0257140_10503421	F088317	MPGPEDKISYPAKQTISQDALNATAPKVRTDVYKGVQVPALPPLEKSQILRSIESGFKETEDPTRYIMNPPGDLPYRLLPLSTKFVSCNTRHLKEIGAFRTLCPELFGDAGYKLVDDAYASFAFGEFKTAQTRGQLKNAPNCTAKEIGAFIATVYDIQNFPVVIAEATDKRVRIQLYKGLPVYCPYDTRRGDYRLCAATAGYERELTKLCNPKLHAFLSRTKAIGDDCCEL
Ga0257140_1059942	Ga0257140_10599421	F046170	MIRIQDFGEVAYGGAVTLTSWWDNKRIEEGKIGTKDVFKKASFYTYLGVGLVATLMSVFGWMRRYEVWMEKVSTGFLYDLPRFAYDMSKTLSSAGRARTSESAAVREAQRILQQRSTARQLTEGQAQSTQRSYQPEFNKTMAW
Ga0257140_1074200	Ga0257140_10742002	F083597	MKIDDKNSAVSWKIFIWAIAIILGLFSISYGMIANAQLKAESAYNNIYQIRTDIEVIKTDVNWIKNNI
Ga0257140_1083173	Ga0257140_10831731	F056324	IFSFIAAFSGCAGSKIYLLDVKYLAEKKLPPASKVVGICPFEDARKGKGKENIGVRHRPGKHVDLLKLEGGNLSEVTTQAVKDYFAEKGFEITDCRGWDKSPEGLDRLPKNLSLVIGGKIDSFMVEAKSGIIITDIQYRVKIEALIGQIEDRKVVTRTIKSAPTSKEMGFNPGKIKAELNSILTE
Ga0257140_1089210	Ga0257140_10892102	F080857	VYKGWRLTIYEPVRESLDLEIGDRLRVTVRKDEGSSHSRP
Ga0257140_1093520	Ga0257140_10935201	F033261	FGHRIGRHDLYLDILPPGYVLRTWRDDQGELHREVEYDQTAFFLSAWLRCLVFNLMTRFAQALGGEYTKMWAGTLLRKFIRRPATLYLVCKELHVVFDPFPGQEELQPLLDKLNAKRTALPWLNNLVVQFSIAQDEPLHPLTEPEKRNRLFGDG
Ga0257140_1094174	Ga0257140_10941742	F065253	TSTHTVVFDRDPDYPRFARDTGGSVKRMLRIWLAEPGEGCPNLRAYLGTVTFCFMGPSFRDMCRLFHLTSKAAKAAGQSAKALRNDLAMLLRKYIREEYGPSGVSQPS