3300028621: Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_1_27_40m (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300028621
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0297569 | Ga0257142
• Sample Name: Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_1_27_40m (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 161096968
• Sequencing Scaffolds: 29
• Novel Protein Genes: 31
• Associated Families: 25

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium	2
Not Available	17
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium JGI_Cruoil_03_51_56	1
All Organisms → cellular organisms → Archaea → TACK group	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → lake → saline water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Canada: British Columbia
• Coordinates
  • Lat. (^o): 49.68
  • Long. (^o): -124.009
  • Alt. (m): N/A
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000344	Metagenome / Metatranscriptome	1257	Y
F000388	Metagenome / Metatranscriptome	1201	Y
F004323	Metagenome / Metatranscriptome	443	Y
F008512	Metagenome / Metatranscriptome	332	Y
F013725	Metagenome / Metatranscriptome	269	Y
F018558	Metagenome / Metatranscriptome	234	Y
F018909	Metagenome / Metatranscriptome	232	Y
F025295	Metagenome / Metatranscriptome	202	Y
F030484	Metagenome / Metatranscriptome	185	Y
F039953	Metagenome / Metatranscriptome	162	Y
F044534	Metagenome / Metatranscriptome	154	Y
F054975	Metagenome / Metatranscriptome	139	N
F055311	Metagenome / Metatranscriptome	139	Y
F065812	Metagenome / Metatranscriptome	127	Y
F067889	Metagenome / Metatranscriptome	125	Y
F076133	Metagenome / Metatranscriptome	118	Y
F079305	Metagenome / Metatranscriptome	116	Y
F088317	Metagenome / Metatranscriptome	109	Y
F089118	Metagenome / Metatranscriptome	109	Y
F093163	Metagenome / Metatranscriptome	106	Y
F093176	Metagenome / Metatranscriptome	106	Y
F094064	Metagenome / Metatranscriptome	106	N
F098292	Metagenome / Metatranscriptome	104	N
F098546	Metagenome / Metatranscriptome	103	Y
F105212	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0257142_1006897	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium	2247
Ga0257142_1009936	Not Available	1865
Ga0257142_1012110	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium JGI_Cruoil_03_51_56	1674
Ga0257142_1019613	Not Available	1293
Ga0257142_1022172	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium	1205
Ga0257142_1027721	Not Available	1061
Ga0257142_1038401	Not Available	878
Ga0257142_1040153	Not Available	856
Ga0257142_1041322	All Organisms → cellular organisms → Archaea → TACK group	842
Ga0257142_1042761	Not Available	826
Ga0257142_1043153	Not Available	821
Ga0257142_1044583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	805
Ga0257142_1046575	Not Available	785
Ga0257142_1052733	All Organisms → cellular organisms → Eukaryota	731
Ga0257142_1052964	Not Available	729
Ga0257142_1058632	Not Available	688
Ga0257142_1059842	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	680
Ga0257142_1062397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	664
Ga0257142_1063050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	660
Ga0257142_1063875	Not Available	655
Ga0257142_1066617	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	639
Ga0257142_1069322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	624
Ga0257142_1072484	Not Available	608
Ga0257142_1077404	Not Available	585
Ga0257142_1082574	Not Available	563
Ga0257142_1091320	Not Available	532
Ga0257142_1094229	Not Available	523
Ga0257142_1096644	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	515
Ga0257142_1099073	Not Available	508

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0257142_1006897	Ga0257142_10068972	F093176	MTTVKRILLVFVICVLAVAYLYQHSYSVRLTRNLSRLETERQLLTERLEGVGAEIVTLSGFVRMESLWVAQGRPEAPADQIAIVDGQVVAMAKHPGADAAAR
Ga0257142_1009936	Ga0257142_10099362	F018558	MKKDYEAPKVITYSEDEIVEILGPAQTCSPSPCPTY
Ga0257142_1012110	Ga0257142_10121103	F079305	MMRFIAALMACAGLATAAGFHVQGNMSEAWDKSTLRVRTGEGTAKLWFGLPPHSGITVVAKPDTGAAVTARMNMPSTIDLQTPSAYEITITRDSGAGQWTCKDAAGSPVLLGFGCSVDEKRHARLTYVADDDKETWTFTWPKEATFLVQLLGASGKIVEEQDLYYSDELELVGGGSFTFEIAPTDGSGEFSAKKSE
Ga0257142_1019613	Ga0257142_10196132	F079305	MMMVAAGAALATAAGFQVQVNMSEAWDKSSFRVRAGEGGAKLWFSLPAHSGMTVVAKPDTGAAVTSRLNMPATVDLRLPSTYDITVTCDSGEGQWTCKDAVGSPALLGFGTSVDAKRHARVTYGADGQKETWTFTWPREAEFLVQVINASGKVVEEQDLYYSDELELVGGGSFTFEVAPTDGSGEFKAKKSE
Ga0257142_1022172	Ga0257142_10221722	F067889	MDNKEEDVRRLIAAAAILAVVFVIGCQDTKKVTELQGQVDQLNQQITEMQTVVIAKLTAERDSLAKLVVDLQAKMPAVKGGTTKPPTGGGTGGGLKPPTKK
Ga0257142_1027721	Ga0257142_10277211	F093163	MERKDVIDRAYQLINEPIDPNLKCAVELVDIVNYKESEAGETVEYFASSAQDRAADDIYAADANGTLTYHKIGLKTVTALTFVGLQSKLETVLIDEILNSKDQSALAQKKEAIIRAMDSEEVKRILALCLAVASQEVNKVTGMDLLDTIIKMKEKVSNYATDYVLLVASDVMNEIESYDKDNVSTFNYKMSIKEELAKIGIVKIVKVLGDSYLGGSTTPTLAAGKAILVGRNSGLAAGRPITFLRRKFSKEIAELSGAAEGAVRLIDVAKTPTVINGSSANTLGYGVFGYESIIQ
Ga0257142_1038401	Ga0257142_10384011	F105212	SHKGSPKNGGSGQKFLIELEAKSHGSQDPHHRWVGVWDYEEQSEEARITKKC
Ga0257142_1040153	Ga0257142_10401531	F105212	HKGSPKNGGRGRKFLIELEAKSNGSQDLRHRWVGVQAGKEQSDAGRTTARCQVFF
Ga0257142_1041322	Ga0257142_10413222	F030484	MVDKKEEAIDAAISKMSQIKKAAGEFRENVAGLVKDVNIESKDWRFNVESHKEGVTIDIAIKLLMTKKEEDLETSN
Ga0257142_1042761	Ga0257142_10427611	F025295	IMVTGPGEATELLRRREVLIPEKLKFITRKSNLQKQI
Ga0257142_1043153	Ga0257142_10431531	F004323	MPLDGLRRLEGKATPVVASLSPVTRDYPSRALSGVFQAAALRLF
Ga0257142_1043153	Ga0257142_10431532	F000344	MRLKHPRAAESGVGKHTARESESAQACAAGKERVANAHSHK
Ga0257142_1044583	Ga0257142_10445831	F088317	MAGPEEKVKYPERPKITSAEVNKTAPKTRRDHYKGIQAPPVPKLEKSQLMEWVETGKPEDPSRYVMMPPREVPYRKLPLAVKFVSANTRHLKEIGAFRTMLPEIFGEAGYKAVDDAYASFADGEFRTAQARGMLKSAPNCSLQEIAAFICTVYDIQNFPIVIGEADYDNEVVRIQLYKGLPKYCPYDVRQGDYRLCAATAGYERELVKMCNPKYRAYLSRTKAIGDDCCELTIEVDPGNK
Ga0257142_1046575	Ga0257142_10465751	F008512	LLLCISTVRTALAGANKIETAQRKMPKGGQKERTHREEHGNLAGSLKNFQTPAMLKTTPLDCEIKGNLREKRRDPWLRANAPPTAVADREPVVKTRTRFAGVS
Ga0257142_1052733	Ga0257142_10527332	F065812	MGYKLLLRLNIDVRPIANKYCEGKIKRTLKRGLKDVKSLRRKL
Ga0257142_1052964	Ga0257142_10529641	F039953	MLANPLELRGRHRVNNKNPEAALEADGWGNSMAEAYTGNSIGHREGRILLKVDIAPKY
Ga0257142_1058632	Ga0257142_10586321	F054975	LITKKKFFLISEDELKKFHQYVFDGLSVFDDLDAKNLFHDVGSRQGQNDIRSWQLVCKYCPLNLRCEVLIEDTSKCQIFNKLTVRKYSLHAMEEIQFQRKRLQEIFDDMKKAGTCDNHCDICILCDNAGECVAEKAMRLLRESKIKDQSGTVCTA
Ga0257142_1059842	Ga0257142_10598422	F098546	AFPLATMTQTKESGAGPSTKASWSVLVIYEDNAACDRAVGFCDQLVDRFWAKCDFEVSWWPFTLLKETVSAREAALKASGADLILFSTTPEGDFPLAVKAWIETWPKQRGGREGLLIGLMGSSTAPADQEGQKHHCLRNAAHHGAMDYLTQVPQDIALSIPNSLDSYTQRADQVTSLLDDILHQHLPPPSLSS
Ga0257142_1062397	Ga0257142_10623971	F044534	PESCPVSSHTNQELSGKARLESALSRVRPTGGFDPCADAVTPEGFGCYCADQNAVTVPGGPTPPKGLTRSTREARKGVGTAGSERIWQNP
Ga0257142_1062397	Ga0257142_10623972	F000344	MRPKHPHAAESGVGKHIARESERVQACATGKERVTNAHP
Ga0257142_1063050	Ga0257142_10630501	F000344	MRPRHPHAAESGVGKHTARESESAKACAAGKERVANAHSHKLASEALT
Ga0257142_1063875	Ga0257142_10638751	F079305	IVLACAGVAMAAGFFVQGNMSEAWDKGSLRVRTGPEMAKLWFGLPAHSGITVLAKPDTGAAVTTTLNMSATIDLRVPAEYAITVTRDSGDGQWTCRDAAGNPVLLGFGSSVDETHHVRLTYVADEDEETWKFTWPKEATFLVQLFGKAGKVVEEQDLSDSDEFELAGGGSFTLEVVPTEGSGEFSAKKSE
Ga0257142_1066617	Ga0257142_10666172	F055311	MAEDLLDYWVRLIRTIFPANAWINSRFSNNDHLIQIDWKLQNDSENPTKRSKKIEIIIKEGAIEDYLDKNKKDRELSDIMLKEFICERYTNYISDNDIHINQYASTKTWLISRDVLNCKPSFDTPLRDQVKSVYL
Ga0257142_1069322	Ga0257142_10693221	F076133	QELCRQARSETAPRGVRLAGRFDLQADAVAPEVHGCYCADQNAIAFPGGTTPPKGPDRHPTRARKGDAKAGRERT
Ga0257142_1072484	Ga0257142_10724842	F000388	VKYEIIKVTKEYFQTEDEKVYFFEPLEKEISVEDMQKIVDANEKLVKELKNAKD
Ga0257142_1077404	Ga0257142_10774042	F093176	MSMVRRMLLVFVLCVLAVAYLYQHSYSMRLTRNLSRLETERQLLAERLDGVNAEVVRLAGFARTESLWTAQGRPAVPSDRPGPVDGQSVALAQHPGADEAAH
Ga0257142_1082574	Ga0257142_10825741	F089118	LVGMLLVFSLKSMQTGTRLNRQLAEVEQARETLSKMFPDSRFRIQLSTPNPGIRNLVVTIQPGRADSSSVESQVDTAESVIRRTVDLTGYDSLVVAVFDRVYRAAPAR
Ga0257142_1091320	Ga0257142_10913201	F094064	KDYSGPVCPYVHLENFSKKVVRDLAVQYARAYSQIDGHWYDAVAKRYGEKIARDIDLEVWLRNIPPTALRTLEALGVKERDMAAILKVTQFHPAAGGGEYLWDYEVELKSPTVGIVKVLKCKPYEYYRDKGDEGFVRVMCRDWDIPMFGITGSAVIPGVKCRPLVIPPYDAPYDTK
Ga0257142_1094229	Ga0257142_10942291	F098292	MSDVTRRIERWQKKYSPAQAKATLDLLQEGMRQRYEAATVEMAAMEMKVKEVLNQQGVHTTNYVPYLSYARQLWKLGRQQHITGESFAMASEVLLQKWAGRGQDPDVLAAIRSQVFNSPPPAP
Ga0257142_1096644	Ga0257142_10966442	F013725	ETNNRGPLAKGQVWKTRAADIEIVALGKRLIHYRITRQFGRRKVSAQISGIEAMANYLAANSARLVKGHSTN
Ga0257142_1099073	Ga0257142_10990731	F018909	RVNTLSHSKKGEITMKWVSIAIGAVIAISVIPTIVTSVAGLTGSGMALDGTVAGTLLDLAPLVFVASVLAFLFLKTGSKKVD