3300028585: Plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T30

Overview

Basic Information

• IMG/M Taxon OID: 3300028585
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0134331 | Gp0306427 | Ga0265797
• Sample Name: Plant litter microbial communities from East Loma Ridge, Irvine, California - P2 T30
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1857837941
• Sequencing Scaffolds: 16
• Novel Protein Genes: 29
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporales → Pleosporineae → Pleosporaceae → Alternaria → Alternaria sect. Alternaria → Alternaria alternata complex → Alternaria alternata	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	5
Not Available	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Plant Litter Microbial Communities From East Loma Ridge, Irvine, California
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Plant Litter Microbial Communities From East Loma Ridge, Irvine, California

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): grassland biome → litter layer → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 33.7416
  • Long. (^o): -117.7042
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003289	Metagenome / Metatranscriptome	495	Y
F009305	Metagenome / Metatranscriptome	319	Y
F030315	Metagenome / Metatranscriptome	185	Y
F056350	Metagenome / Metatranscriptome	137	Y
F071840	Metagenome / Metatranscriptome	121	Y
F075510	Metagenome / Metatranscriptome	118	N
F081964	Metagenome	113	Y
F088701	Metagenome / Metatranscriptome	109	N
F092248	Metagenome / Metatranscriptome	107	Y
F102187	Metagenome / Metatranscriptome	101	N
F102612	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0265797_10015411	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporales → Pleosporineae → Pleosporaceae → Alternaria → Alternaria sect. Alternaria → Alternaria alternata complex → Alternaria alternata	8899
Ga0265797_10036095	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	4886
Ga0265797_10036875	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	4815
Ga0265797_10100356	Not Available	2425
Ga0265797_10194549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1522
Ga0265797_10271114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1193
Ga0265797_10287366	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	1142
Ga0265797_10312749	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	1072
Ga0265797_10336162	Not Available	1016
Ga0265797_10410856	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	873
Ga0265797_10425119	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	850
Ga0265797_10516746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	730
Ga0265797_10523561	Not Available	722
Ga0265797_10649777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	609
Ga0265797_10651501	Not Available	608
Ga0265797_10810852	Not Available	510

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0265797_10000315	Ga0265797_1000031522	F081964	VITTASCYRQQIVRAVTGRAPAITWTVTNSGSLDRICARLVEAERAAEILQAKGYGKPGLLLHEVAALVPAK
Ga0265797_10000997	Ga0265797_100009972	F081964	MTTATCYRQLIVRAVTGCAPAITWSVTNSGAIDRICARLVEAERAAEILQAKGYGKPGLLLHEVAALVPAKL
Ga0265797_10001588	Ga0265797_1000158829	F081964	MSMPVEVYRDQIIRAVTGNQPAMVFRVVDETALRRLSDRLAESERAHALLRAKGYGGTGLLLDELAALVPDKP
Ga0265797_10003259	Ga0265797_1000325934	F081964	VSQPVDCYRHVIIRAVTGNRPAIVWNVTDRAALDRICERLAESERAAEILQALGYGRPGMLLHEVAALVPAKT
Ga0265797_10010641	Ga0265797_100106419	F081964	VSQPVDCFRHAIIRAVTGGHPALVFHVVDETALRLICERLAEAERAFEILRAKGHGRPGMLLHEVAALVPAAHTQDNR
Ga0265797_10015411	Ga0265797_100154113	F102612	MSSPAQPSPEVLQAYHQRLETLYQSLPDLLTTEQEDKTGTEALEQDVGKLDVKEQNLEDRVNKYCQEFLYIGGPTPYKRDLTST
Ga0265797_10015951	Ga0265797_1001595117	F081964	MTSATCYRQQIVRAVTGFAPAITWTVTNSGSLDRICARLVEAERAAEILQAKGYGKPGLLLHEVAALVPAKL
Ga0265797_10036095	Ga0265797_100360953	F092248	LLRLLLPLSDKVYFYFHDRVEPGHGPLGSPDHSKSVGATGGVYKGQGRNQHKLMTYAY
Ga0265797_10036875	Ga0265797_100368754	F003289	MXGNIVTEVALQSNFGIGFNNMKSDVLIHLTQXQYXXXFXFSFLXAFYYLVILRVIRFRTLKFRPRLATTYRPHGKXGDLLICIIPISXCSNIITNSNLIMRMIEXQAETGLLTIRIRGKQXYXIYKFELKTFTDILTIPKNIGNNKXQISTPGDLQTADDYLHILQLRSQNKXVKKYXNDLNQKFGKQKNFHIISFQEQLNYNFYENFNNFIKISNLNSNGLFLK
Ga0265797_10040817	Ga0265797_100408175	F102187	MLHVYTAIVMTLHHGNDAKRGACAAPTITMLYPYDLVIYPTFSFLSYSLTHRRLCHNAWTALGVTSLLHPHTQGIATRVTKTKFRLFPLGLGGWIGRESWGWLRTSCTRTRLFLVGDDDFLHPFPSVTCPPFVCIYGVCEGNISLAFQRRLYTGSFSSFFVITVARQSRAALGVRDAWLRAFLSFPVVYSERKSFVPTFVSRVYDNNRDYGVEKGNGNTCRHACWCTSMARRSGICMYTTSKSRVQFQNFHSLLHWDQAWFPIP
Ga0265797_10092808	Ga0265797_100928082	F102187	MLHVYTAIVMTLHHGNDAKRGACAAPTITMLCPYDLVIYPTFSFLSFSLTHRRHSHNAWTALGVTSLLHPHAQRIATRITKTKFRLFLLGLGGWNGRESWGWLRTSCTRTRFLFVGDDDFLHPFPSVTCPPLVCIYGVCEGTISLALQRRLYNGSFSPFFDITVARQSRVALGVWDAWLRAFLSFPVVYSKRKSFVPTFVSRVYDNNRDFGAEKGNGNTCRPACRCICMARRSGTCMYTTSKSRVQFQNFHSLLHWDQAWFPIP
Ga0265797_10100356	Ga0265797_101003563	F088701	VAVVLKGPEKIPIPLFKNRKNKLSYAIKAEISKIVIVALEHNIDLSRLSVIELDKSKMINDIINT
Ga0265797_10194549	Ga0265797_101945491	F056350	LAWYQRTYFNLNIGNLIKYFSILTVAFHDIHSLFGFCILLVVFSQLISGTMLSFSLVPEAMMVPIVRDEEDLEDLYTDDFFXIHERGVDLLFIFSXLHLCRKLYINAFEYEHEIAXKSGVFTFMIL
Ga0265797_10228096	Ga0265797_102280962	F003289	MXGNIVTEVSLQSNFGVGFNNMKSDVLIHLTQWQYXXXFXFSFLWSFYYLVILRVIRFRTIKFRPRIATTFRPHGKXGDVLICIIPISXCANIISNSNLILRMIEWQAETGLLTIRIRGKQWYWIYKFELKA
Ga0265797_10234971	Ga0265797_102349712	F081964	VQTVQCFHHAIILAVTGNRPAIVWKVIDNAALNRVCERVAEAERTAEILPAKGYGKPGQLLHDVATQVPAAHTRDSR
Ga0265797_10271114	Ga0265797_102711141	F056350	LAWYQRTYFNLNIGNLIKYFSILTVAFHDIHSLFGFCILLVVFSQLVSGTMLSFSLVPESMMVPIVRDEEDLEDLYTDDFFXIHERGVDLLFIFSXLHLCRKLYINAF
Ga0265797_10287366	Ga0265797_102873662	F003289	MXGNIVTEVSLQANFNVGFSNMKSDVLIHLTQWQYXXXFXFTFLXAFYYLVILRVVRFRTLKFRPRIATTLRPHGKXGDVIICIIPISXCANIISNSNFILRMIEXQAETGLLTIRIRGKQXYWIYKFELKTFTDILTIPKNVGRNKXQISTPGDMQVSDDYLHILQLRSQNKXV
Ga0265797_10312749	Ga0265797_103127491	F075510	LQVVTFFGLVLCCTHLSEITLTIAANVVHTVFLFHGKFYXXIFTDKNLNTDTLIRLAYAHYLSAFYMAYLGLLHGIDMHYDXKNESSYDGLDVEMSWXDEALSNELGSFLELIFILNVICXXLYPEPEALSYEIFMXGDIGLISDVRFYGVAPHXYFRPYMAXLIVCPHHKTGIFGLLYLFLVLFHQPTLHGINEHNLYYKRRLLFSANKIKQKVFYKQSYLNVELNLFFQVTYTFFVMCGLYTFTFLPYGRFYNRLGGNIGMLFAYMYVFVYLGVTSLRRPYXLELYFYFIYNKSNFFKNIKFIN
Ga0265797_10336162	Ga0265797_103361621	F003289	MXGNIFTETVVQTNFHVGFSNNKSDVLIHLSQXQYXXXFXFTFLXAFYYLTLLRVFRFRTLKFRPRLATTQRPHGKXGDLLICVIPVSXCANILSNSQFILRMIEXQAEAGLFTVRIRGKQXYXIYKFELKTFTDILTAPKNIGRNKXAIYTPGDLQTANDYLHVLQLRSQNKXVKKYXN
Ga0265797_10410856	Ga0265797_104108561	F075510	XKSGVFTFMILQVVTFFGLVLCCTHLSEITLTIASNVVHTVFLFHGKFYXXIFTDKNLNTDTLIRLAYGHYLSAFYMAYLGLLHGIDMHYDXKNESSYDGLDVEMSXXDEALSNELGSFIELIFILNIICWXLYPEPEALSYEIFMXGDIGLVSDVRFYGVAPHXYFRPYMAXLIVCPHHKTGIFGLLYLFLVLFHQPTLHGINEHNLYYKRRLLFSSNKIKQKVFFKQSYLNVELNLFFQITYTFFVMCGLYTFTFLPYGRFYNRLGGNVGMLFAYMYVFFYLGVTSLR
Ga0265797_10416487	Ga0265797_104164872	F081964	VSQPVVSYRHAIIRAVTGNRPAMVFHVVDETALRSICERLAESERAFEILRAKGYGKSGQLLHEVAALVPNAG
Ga0265797_10425119	Ga0265797_104251191	F056350	LAWYQRTYFNLNIGNLIKYFSILTVAFHDIHSLFGFCILLVVFSQLVSGTMLSFSLVPESMMVPIVRDEEDLEDLYADDFFWIHERGVDLLFIFSWLHLCRKLY
Ga0265797_10425990	Ga0265797_104259902	F081964	MTTATCYRQQIVRAVTGRIPAIIWNVTNSGSLDRICARLVEAERAAEILQAKGYGKPGLLLHEVAALVPPAP
Ga0265797_10516746	Ga0265797_105167461	F009305	YMAYLGLLHGIDMHYDXKNESIYDGLEPEMSXXDEALSNELGTFIEAIFVLNIICXXLYPEPEALSYEIFMXGDIGLISDVRFYGVAPHXYFRPFMAXLIVCPHHKTGIFGLVYLFFALFHQPTLHGLNEHNLYYKRRLLFTIGRIKQKKFYKQSYLNVELNLFFQTTYTMFIMCALYTNTFLPYGRFYNRLGGNIGMLSAYFYVFLYLAITSLRRPYWLELYFYFIFNKLNFLKNIKLKNNL
Ga0265797_10523561	Ga0265797_105235611	F030315	MKYIEFIIIINYENILLLKNDIEVLKYNYRIGLDTLLVYTIKYEYIINLLKLTF
Ga0265797_10609280	Ga0265797_106092802	F081964	VSQPVVSYRHAIIRAVTGGRPAMVFHVVDETALRIICERLAESERAFEILRAKGHGRPGMLLHEVAALVPNAS
Ga0265797_10649777	Ga0265797_106497771	F009305	YMAYLGLLHGIDMHYDXKNEATYDGLEPEMSWXDEALGNELGTFIEALIILNIICXXLYPEPEALSYEIFMXGDIGMVSDVRFYGVAPHXYFRPFMAXLIVCPHHKTGIFGLALFFFALFHQPTLHGFNENGSYYKRRLLFTINKLKQKTFYKQSNLNVELNLFFQTTYAFFVMCALYTSSFLPYGRFYNRLGGNIGMLGAY
Ga0265797_10651501	Ga0265797_106515011	F071840	YYYINSFEFIVVGLLLLFVSLVCVNLNKFSKSFKLNNYYSLLTLFDFFSDFIHFFFLRKQNLVDQTNHPAATRVFKKKIKK
Ga0265797_10810852	Ga0265797_108108521	F003289	MXGNIVTEVALQSNFGVGFNNTKSDVLIHLTQXQYXXXFXFSFLXAFYYLTVLRIIRFRTIKFRPRIATTFRPHGKXGDVLICIIPISXCANIISNSNFILRMLEWQAETGLLTIRIRGKQWYXIYKFELKAFTDILTIPKNIGRNK