3300028482: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung D8

Overview

Basic Information

• IMG/M Taxon OID: 3300028482
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116274 | Gp0272175 | Ga0233372
• Sample Name: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung D8
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 169745134
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 38.04
  • Long. (^o): -122.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028722	Metagenome / Metatranscriptome	190	Y
F072921	Metagenome / Metatranscriptome	120	Y
F075523	Metagenome / Metatranscriptome	118	Y
F082826	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233372_1001046	Not Available	10979
Ga0233372_1012584	Not Available	1588
Ga0233372_1073486	Not Available	541
Ga0233372_1073652	Not Available	541

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233372_1001046	Ga0233372_10010466	F028722	MQSCLEKRGIEERSVEIVRSDYNIENQYGSSHVDALSNGDIHGKGTGHGGHTHYLPDCNKPTSTIDYSNFDTLNGGGLYDIEGRNDVGGRKKAINSSLYNHEKQYSANLVNTEINLRQGQYQTN
Ga0233372_1012584	Ga0233372_10125842	F082826	MKYTVELNYNASIVVTVEANDEGEALDKARNIAEESDIEQFTITNERESQILSTN
Ga0233372_1073486	Ga0233372_10734862	F075523	MTPQEINDQLELLRLKELFMSDIKIRSKMALLLSDECAAEVPPYQEFCELTHCTPEIATMFTEISLYDVILTPEEIAAKRERLEKMKL
Ga0233372_1073652	Ga0233372_10736521	F072921	DRKSASEGEYIEIRWACDACPDSLYLAIDSGCTQYSIAVSDSGVTRIPIPRSNGKMTVKLIGVISGKKVTESIDVRVKATKKAGTKAPLSSRMKMFGEKMQAKWYVFRANMKYWWLSQKKWQKALWIALLALWLGLLFSSIGRKPEVKVSSDKIQTAYIFS