Sample 3300028454

Basic Information
IMG/M Taxon OID	3300028454 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118397 \| Gp0213379 \| Ga0307245
Sample Name	Goat Fecal Pellet Co-assembly of all samples untreated with antibiotics
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300028454 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0118397 | Gp0213379 | Ga0307245

Sample Name

Goat Fecal Pellet Co-assembly of all samples untreated with antibiotics

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	1064183348
Sequencing Scaffolds	28
Novel Protein Genes	29
Associated Families	19

Dataset Contents

Total Genome Size

1064183348

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus → Butyricicoccus pullicaecorum	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter	1
Not Available	17
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → unclassified Rikenellaceae → Rikenellaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus → Butyricicoccus pullicaecorum

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter

Not Available

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → unclassified Rikenellaceae → Rikenellaceae bacterium

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.

Ecosystem Assignment (GOLD)
Name	Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
Type	Host-Associated
Taxonomy	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Ecosystem Assignment (GOLD)

Name

Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Type

Host-Associated

Taxonomy

Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal distal gut

Location Information
Location	USA: California
Coordinates	Lat. (^o)	34.4148	Long. (^o)	-119.8405	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Location Information

Location

USA: California

Coordinates

Lat. (^o)

34.4148

Long. (^o)

-119.8405

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F011633	Metagenome	288	Y
F041506	Metagenome / Metatranscriptome	160	Y
F041521	Metagenome	159	Y
F044232	Metagenome	154	Y
F052303	Metagenome	142	Y
F056212	Metagenome	137	N
F060488	Metagenome	132	Y
F068310	Metagenome / Metatranscriptome	124	Y
F070723	Metagenome	122	Y
F072921	Metagenome / Metatranscriptome	120	Y
F075508	Metagenome	118	Y
F081965	Metagenome	113	Y
F083484	Metagenome	112	Y
F084822	Metagenome	112	Y
F086383	Metagenome / Metatranscriptome	110	N
F092993	Metagenome	106	N
F096172	Metagenome / Metatranscriptome	105	Y
F102214	Metagenome	101	Y
F102240	Metagenome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0307245_1007790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Butyricicoccus → Butyricicoccus pullicaecorum	994	Open in IMG/M
Ga0307245_1125354	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
Ga0307245_1145881	All Organisms → cellular organisms → Bacteria	5826	Open in IMG/M
Ga0307245_1190248	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter	19262	Open in IMG/M
Ga0307245_1203004	Not Available	706	Open in IMG/M
Ga0307245_1337576	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → unclassified Rikenellaceae → Rikenellaceae bacterium	1384	Open in IMG/M
Ga0307245_1350222	Not Available	513	Open in IMG/M
Ga0307245_1370124	Not Available	615	Open in IMG/M
Ga0307245_1387919	Not Available	527	Open in IMG/M
Ga0307245_1426799	Not Available	998	Open in IMG/M
Ga0307245_1453793	Not Available	512	Open in IMG/M
Ga0307245_1492662	Not Available	827	Open in IMG/M
Ga0307245_1493706	Not Available	645	Open in IMG/M
Ga0307245_1498935	Not Available	546	Open in IMG/M
Ga0307245_1513462	Not Available	619	Open in IMG/M
Ga0307245_1523375	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	875	Open in IMG/M
Ga0307245_1539098	Not Available	1240	Open in IMG/M
Ga0307245_1581847	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	3376	Open in IMG/M
Ga0307245_1587272	Not Available	552	Open in IMG/M
Ga0307245_1603329	Not Available	673	Open in IMG/M
Ga0307245_1620680	Not Available	723	Open in IMG/M
Ga0307245_1625904	Not Available	1020	Open in IMG/M
Ga0307245_1659706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2133	Open in IMG/M
Ga0307245_1709761	Not Available	846	Open in IMG/M
Ga0307245_1724720	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	3088	Open in IMG/M
Ga0307245_1782371	Not Available	609	Open in IMG/M
Ga0307245_1787179	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1620	Open in IMG/M
Ga0307245_1792073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2134	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307245_1007790	Ga0307245_10077901	F084822	MATYEDNAYNWMKRKGLASKYEHAGIYCIKIDNDIVYIGKSGNM
Ga0307245_1125354	Ga0307245_11253542	F011633	MIKEEIWSVSIQRARAFFREQEDVHEESANVYLFGSCRIQLTELKPKGMGVWAAKRIKVHMEGQMEDVENIYHRYFIQFLSTGG
Ga0307245_1145881	Ga0307245_11458814	F056212	MTFKKFAEIAATHRPDAVVHAHGSFGGAQDIAIYFKRSDGSKSRVYSYRGNYADILNRLGVKVITQSDVATAEAQLRMAKKAHGKPSLFGKGTIRDCSEEIEHLTELLRRYQTDEFVRDW
Ga0307245_1190248	Ga0307245_11902481	F086383	MTLHIALDGIYVNVNHMIIQKLAEYLTQNSYTVKTIFPLQDESIQSILAGYDLTFSEKAMIAALDRSITWNHQNFSNYDIVIWQTSILSSYVFHTDESVKPSFIKSINRFVPNMDIIVVVQPLEEKNQIIQKFNEVIKQFDNVYPVNFVYGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSRNCKDYAKEEQNRLNFRNYYKRYKDTMSE
Ga0307245_1203004	Ga0307245_12030042	F075508	MANYKGLDCVMGEITHMACAAKDSIHEQHVHEYFAAMEKYVHSAVPQLIADYLDEFREKLIVEFETYFNGERMHHADIAKAIAEIVAKSINAAALKISIEF
Ga0307245_1337576	Ga0307245_13375763	F072921	IRWACDACPDSLFLSIDSGCTQYSIAVSDSGVTRIPIPRSNGKMTVKLIGVISGKKVTESIDVRVKATKKAGTKAPLSSRMKMFGEKMQAKWYVFRANMKYWWLSQKKWQKALWIALLALWLGLLFSSIGRKPEVKVSSDKIQTAYIFS
Ga0307245_1350222	Ga0307245_13502222	F068310	MSNPNMEAKVKELMELKRLKEELEAEIAAAEDAIKAVMGDEEQVALVLLH
Ga0307245_1370124	Ga0307245_13701241	F081965	AKKFKKLKYTITASFQAKIGWKRIRRRENKNYHYVSFKPGA
Ga0307245_1387919	Ga0307245_13879191	F070723	MNNLSNTAKKLDKVLEIAHIVFGALAIACIVGVALIAAAYILRLDPNMIGTGYENFDVGFLELTVAESYAPDKWMILLQAAITLAVSCRLMYDARRGVGYIREILNPMKEEKPFDTIVSTNLKKLARLSINLGIFYNMIILSEQIMTVFVYGLPGLLISEKV
Ga0307245_1426799	Ga0307245_14267991	F096172	LHLSDIYSLMLFILFKVQEIPEYAVISELCYLLDGANMTRLLTYFAGKTVTFPTEAEMAIVTNALLMYQYINIDGETFTAAQNKLGKLTKKEKDDVTELYVQLLPIMKQYNIDRSQIQKG
Ga0307245_1453793	Ga0307245_14537931	F044232	LKRLLSILLSVLLLLALFPAMAVGAEANDISEFELPVPQAPNYFVFTDGNEKEGQHDDLRMIMVADPEVALLAAEYDRDSDAFYQKYGLYSFEISMQYDVSLDGEGNWQHNEEWDTNWYTAGYAEGYPYVSLRGK
Ga0307245_1492662	Ga0307245_14926621	F086383	KSYTVKTIFPLEDEIIQSILNSYDLTFSEKALLTALDRSITWNHQNFSNYDIVIWQTSIISSYVFHTNENVKPSFIKSINKFVPNMDIIVVVQPLDEDNQIIQKFNDLIQQFDNVYPVNFVYDGVDLTFKDAIETIFEVLPTCNWCGRLFTKTTHFKKYCSSNCKDYAKEEQNRLNFRSYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL
Ga0307245_1493706	Ga0307245_14937062	F041521	DAGEYRVDSGAGGFIGKIQENSSEVTIRNCAAYGTIKTNYAKDSFNNTPTIYMGGFLSLSNTGAKTTLENCLFAGKFERGANLTDEAELTAFGTLRSVNAIKKCYYLADDDLEAVHSNSDLKPGSDNVEIEGVTEDDLRNNTIATQLGEYWTQGENYPVIKK
Ga0307245_1498935	Ga0307245_14989351	F011633	MTKEEIWSIAIQRARSFFREQEDVTEEGINDYIFRSCRIHLTELKPKGMGVWAAKRIQVRMDGEESDVEDIYHRYFIQFLSTRG
Ga0307245_1513462	Ga0307245_15134622	F052303	MNVIWIILAVLSFIGGQVYLFYLLRKLDKFLERRSSNEPTFTYDDSCRYPEDVVE
Ga0307245_1523375	Ga0307245_15233751	F072921	ASEGEYIEIRWACDACPDSLYLAIDSGLTQYSIAVSDSGLTRIPVPKSDGKMTVKLIGVIPGKKVIESIDVRVKGARRTESKAPLSSRMRMFGEKMQAKWYVFRARCKYWWLSQKKWQKALWIALLALWLWLLFSSTGRKPEVKVSSDQVRTAYLMQ
Ga0307245_1539098	Ga0307245_15390981	F083484	LKRKFSVLLSLLLLLSLFSVSAFAAEENDISKFELPAPKAPNYFVYTDGDATEGHHDHLRMIMVADPEVALLAAEYDRDSEAFYKKYG
Ga0307245_1558978	Ga0307245_15589781	F041521	LENCLFAGKFERGANLTDEARLGAFGTLRSVNAIKNCYYLADDGLAAVHSDSNLKPGSDNVEITAVTEDDLRNNTIATQLGTLWEQGENYPVIKK
Ga0307245_1581847	Ga0307245_15818471	F072921	MKKKMTLSTDRKSASEGEYLDIRWECNACPDSLYLSVDSGYQQYSIAVADNGSTRLAMGRSKGKTTISLIGVISGKKVTESVEIHIRNRKESRKATPPLSTRMKAFGEKMKAKWYVFRAQCKYWWLSQKKWQKALWIAILAIWLGLLFSSIRRKPEVKVSSDQVQTAYLIR
Ga0307245_1587272	Ga0307245_15872721	F075508	MANYKGLDCIMGEITMMASNEKNPVHEQHIYDYFTMTEKFVRTAVPQLVADYLDQFREKLVVEFETYFNGQKMHHDDIARAVADIVEKSIGSATHNLKISI
Ga0307245_1603329	Ga0307245_16033291	F081965	LRFVQTRRVIENSKKIAKKLKNTVMYSFQAKIGLKKMRKGENKNYRSVPFLPDA
Ga0307245_1620680	Ga0307245_16206801	F060488	MLTLILQKLRKVRMSVPAMILLVLASYRTLTSGDSIQLVGVCAAIVPFFCIFKNFPEAEKKAGAIADTISSYLVTLILMLIYLAWILLLTWAGQRFNPGYIPNPYFTDMLFVTIAADIVFLSAVIPVCRCLQPMQRMIPGLILTNAMLFFMMMASSFVKTTTLDNIPVIALGFCGLVIVLTFSMIFAGYRIPKK
Ga0307245_1625904	Ga0307245_16259041	F102240	MKRLTPLSKVLKTLSFYKWAFGDLTEQDSDIDMLAEYLVGDILHCLPPTRKVNAPFDLITKNGTTLEVKATTHKYAQKGRTPYYRWDVSTQSEMLKGNRSIAGYWLFLIATFPRETSSAPRVVQAFDLKNWKAYVVSGEKLRTAGCTRYVSESTLKRLGAKAIPLKDLNHEIR
Ga0307245_1659706	Ga0307245_16597064	F102214	MTESEKRALALQIMAQEQARLASTSFHDHQNATIADLHHEITTRQQYYNDFAQQGITFQEFQKAYSDAYEQGRTDMLAYRFSFFYASTAIAYHEIFSATPEDVATFMKALPKAPEECKNRAELVQRCLAETGLDTRYADEKKPEQRVTRRDRQAVDRMRKTGITKRDLAIEREE
Ga0307245_1709761	Ga0307245_17097612	F092993	TMVSDARPPHDQHIYEYFAATEKFVRTVVPQLFQDCMEQFREQLVVEFETYLNGQKIHHDQLAAAIGDILERSIGEAVKNVSIRI
Ga0307245_1724720	Ga0307245_17247206	F041506	MSKTYTLEDGESLMAELKSTRGMMAEMRGRLERDEITPDEWREWYAGYQARLDEIKEAVSGMREDVSRRNADLERQKRERAAELNMSLEEYETYLKSLIIR
Ga0307245_1782371	Ga0307245_17823712	F052303	MKVIWITLAVLSFIGGQVYLFYLLRKLDKFLERRPSNEPTFTYDDSCRYPEDVVE
Ga0307245_1787179	Ga0307245_17871791	F086383	KSYTVKTIFPLEDEIIQSILNSYDLTFSEKALLTALDRSITWNHQNFSNYDIVIWQTSIISSYVFHTNENVKPSFIKTINKFVPAMDIIVVVQPLQEDNQIIQKFNDLIQQFDNVYPVNFVYDGVDLTFKEVIETVFEVLPTCNWCGRLFTKNTHFKKYCSNNCKDYAKEEQNRLNFRNYYNRYKDTMSESQKGALGSRGANLHAHANEDHEVEARLISNEKKRLGL
Ga0307245_1792073	Ga0307245_17920731	F083484	MKKLFSLLLLILLLAACPAVAAFAAEDPDISAIELPAPKAPNYFIFTDGDAKEGHHDDLRMIM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300028454: Goat Fecal Pellet Co-assembly of all samples untreated with antibiotics

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences