Metagenome / Metatranscriptome Family F068310

Overview

Basic Information

• Family ID: F068310
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 124
• Average Sequence Length: 40 residues
• Representative Sequence: MSNPNMEAKVKELMELKRMKEELEAEIAAAEDEIKAVMGE
• Number of Associated Samples: 29
• Number of Associated Scaffolds: 124

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 97.58 %
• % of genes near scaffold ends (potentially truncated): 98.39 %
• % of genes from short scaffolds (< 2000 bps): 83.87 %
• Associated GOLD sequencing projects: 13
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (60.484 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces (96.774 % of family members)
• Environment Ontology (ENVO): Unclassified (99.194 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut (98.387 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 52.94%
  β-sheet: 0.00%
  Coil/Unstructured: 47.06%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF13443	HTH_26	45.16
PF01381	HTH_3	3.23
PF13744	HTH_37	2.42
PF13280	WYL	1.61
PF09195	Endonuc-BglII	1.61
PF05534	HicB	0.81
PF02661	Fic	0.81
PF04221	RelB	0.81
PF08769	Spo0A_C	0.81
PF02920	Integrase_DNA	0.81
PF03466	LysR_substrate	0.81
PF12715	Abhydrolase_7	0.81
PF14088	DUF4268	0.81
PF00005	ABC_tran	0.81
PF13306	LRR_5	0.81
PF01402	RHH_1	0.81
PF14659	Phage_int_SAM_3	0.81

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	Defense mechanisms [V]	0.81
COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	Defense mechanisms [V]	0.81
COG4226	Predicted nuclease of the RNAse H fold, HicB family	General function prediction only [R]	0.81

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.48 %
Unclassified	root	N/A	39.52 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.48 %
Unclassified	root	N/A	39.52 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	60.48 %
Unclassified	root	N/A	39.52 %

Level 4

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	58.06 %
Unclassified	root	N/A	39.52 %

Level 5

Name	Rank	Taxonomy	Distribution
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	58.06 %
Unclassified	root	N/A	39.52 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.52 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	25.81 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.52 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	25.00 %
Thermoanaerobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales	0.81 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.52 %
Oscillospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	12.90 %
Thermoanaerobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae	0.81 %
Lachnospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	0.81 %
Clostridiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	0.81 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.52 %
Faecalibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	11.29 %
Pseudoflavonifractor	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Pseudoflavonifractor	0.81 %
Thermoanaerobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae → Thermoanaerobacter	0.81 %
Clostridium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	0.81 %
Lachnospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	0.81 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.52 %
unclassified Faecalibacterium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium	11.29 %
Thermoanaerobacter uzonensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae → Thermoanaerobacter → Thermoanaerobacter uzonensis	0.81 %
Pseudoflavonifractor phocaeensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Pseudoflavonifractor → Pseudoflavonifractor phocaeensis	0.81 %
unclassified Clostridium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium	0.81 %
Lachnospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	0.81 %

Level 11

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.52 %
Faecalibacterium sp. CLA-AA-H283	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CLA-AA-H283	11.29 %
Clostridium sp. Marseille-P2415	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. Marseille-P2415	0.81 %
Thermoanaerobacter uzonensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae → Thermoanaerobacter → Thermoanaerobacter uzonensis	0.81 %
Pseudoflavonifractor phocaeensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Pseudoflavonifractor → Pseudoflavonifractor phocaeensis	0.81 %
Lachnospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	0.81 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300012979|Ga0123348_10856197	Not Available	514
3300012983|Ga0123349_10357774	Not Available	1009
3300018427|Ga0187903_10636515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	823
3300018427|Ga0187903_10903094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CLA-AA-H283	652
3300018430|Ga0187902_10348222	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1307
3300018430|Ga0187902_10839238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	738
3300018430|Ga0187902_11185556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	593
3300018475|Ga0187907_10406991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1621
3300018475|Ga0187907_10631175	Not Available	1200
3300018475|Ga0187907_10903284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	940
3300018475|Ga0187907_11331229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	720
3300018475|Ga0187907_11526123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	656
3300018475|Ga0187907_11764005	Not Available	594
3300018475|Ga0187907_12201983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CLA-AA-H283	512
3300018493|Ga0187909_10155511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2834
3300018493|Ga0187909_10206756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2331
3300018493|Ga0187909_10424637	Not Available	1433
3300018493|Ga0187909_10552587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1202
3300018493|Ga0187909_10810560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	931
3300018493|Ga0187909_11352703	Not Available	661
3300018493|Ga0187909_11413015	Not Available	642
3300018493|Ga0187909_11436940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. Marseille-P2415	635
3300018493|Ga0187909_11837857	Not Available	540
3300018493|Ga0187909_11940076	Not Available	521
3300018494|Ga0187911_10064079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	5688
3300018494|Ga0187911_10624215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CLA-AA-H283	1200
3300018494|Ga0187911_11041238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	855
3300018494|Ga0187911_11179170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	787
3300018495|Ga0187908_10052631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	6769
3300018495|Ga0187908_10173077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2829
3300018495|Ga0187908_10255090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Pseudoflavonifractor → Pseudoflavonifractor phocaeensis	2158
3300018495|Ga0187908_10985101	Not Available	861
3300018495|Ga0187908_11511141	Not Available	645
3300018495|Ga0187908_11636198	Not Available	611
3300018495|Ga0187908_11639747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CLA-AA-H283	610
3300018878|Ga0187910_10207734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2775
3300018878|Ga0187910_10255992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2404
3300018878|Ga0187910_10474386	All Organisms → cellular organisms → Bacteria	1582
3300018878|Ga0187910_11622437	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	687
3300018878|Ga0187910_12126498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CLA-AA-H283	572
3300018878|Ga0187910_12219841	Not Available	556
3300019378|Ga0187901_10191626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1770
3300019378|Ga0187901_10328514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1256
3300019378|Ga0187901_10721112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CLA-AA-H283	756
3300019378|Ga0187901_10883815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	663
3300019378|Ga0187901_11128035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	568
3300019378|Ga0187901_11176172	Not Available	553
3300022589|Ga0216346_10062118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3052
3300022589|Ga0216346_10272318	Not Available	1108
3300022589|Ga0216346_10656102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	599
3300022601|Ga0216345_10214304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1257
3300022601|Ga0216345_10569139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	624
3300022654|Ga0216347_10094950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CLA-AA-H283	2064
3300022654|Ga0216347_10277150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1008
3300022654|Ga0216347_10284391	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	991
3300022660|Ga0216342_10893780	Not Available	691
3300022660|Ga0216342_11143331	Not Available	579
3300022661|Ga0216339_10231702	Not Available	1775
3300023371|Ga0216340_10223431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CLA-AA-H283	2045
3300023371|Ga0216340_10480608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1205
3300023371|Ga0216340_11434203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	562
3300024268|Ga0257090_10753445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1046
3300024268|Ga0257090_11478965	Not Available	671
3300024268|Ga0257090_11609754	Not Available	634
3300024268|Ga0257090_11735886	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	602
3300024269|Ga0257076_10802963	Not Available	1027
3300024269|Ga0257076_10842945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CLA-AA-H283	996
3300024269|Ga0257076_10880097	Not Available	970
3300024269|Ga0257076_11577782	Not Available	668
3300024269|Ga0257076_11692984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	638
3300024269|Ga0257076_11792765	Not Available	614
3300024270|Ga0257091_10184372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2710
3300024270|Ga0257091_11062169	Not Available	853
3300024270|Ga0257091_11174360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	798
3300024270|Ga0257091_11787059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	601
3300024270|Ga0257091_11792678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae → Thermoanaerobacter → Thermoanaerobacter uzonensis	600
3300024272|Ga0257077_10091711	All Organisms → cellular organisms → Bacteria	4642
3300024272|Ga0257077_10445541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1615
3300024272|Ga0257077_11989684	Not Available	606
3300024272|Ga0257077_12262946	Not Available	554
3300024272|Ga0257077_12568702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CLA-AA-H283	506
3300024303|Ga0257089_11101520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	773
3300024303|Ga0257089_11491691	Not Available	634
3300024303|Ga0257089_11593670	Not Available	607
3300028242|Ga0302102_10436072	Not Available	994
3300028242|Ga0302102_10437279	Not Available	992
3300028242|Ga0302102_10572410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CLA-AA-H283	839
3300028242|Ga0302102_10840524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	661
3300028242|Ga0302102_11308251	Not Available	503
3300028454|Ga0307245_1350222	Not Available	513
3300028833|Ga0247610_11682016	Not Available	600
3300029305|Ga0307249_10414810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3111
3300029305|Ga0307249_10568578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2404
3300029305|Ga0307249_10679101	All Organisms → cellular organisms → Bacteria	2082
3300029305|Ga0307249_10679244	Not Available	2082
3300029305|Ga0307249_12538340	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	717
3300029305|Ga0307249_12629064	Not Available	697
3300029305|Ga0307249_12991390	Not Available	627
3300029305|Ga0307249_13032419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CLA-AA-H283	620
3300029305|Ga0307249_13037763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	619
3300029305|Ga0307249_13055688	Not Available	616
3300029305|Ga0307249_13481377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CLA-AA-H283	552
3300029705|Ga0224414_10379449	Not Available	2062
3300029705|Ga0224414_11544293	Not Available	727
3300029705|Ga0224414_11843368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CLA-AA-H283	637
3300029705|Ga0224414_11917349	Not Available	618
3300029705|Ga0224414_12084863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	579
3300029705|Ga0224414_12169032	Not Available	562
3300029705|Ga0224414_12251796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	545
3300031086|Ga0074002_13887668	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	531
3300031555|Ga0318466_10357849	Not Available	3285
3300031555|Ga0318466_10648024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2026
3300031555|Ga0318466_10961067	Not Available	1473
3300031555|Ga0318466_10964130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1469
3300031555|Ga0318466_11056264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1364
3300031555|Ga0318466_11326388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1132
3300031555|Ga0318466_11438597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1059
3300031555|Ga0318466_11706363	Not Available	919
3300031555|Ga0318466_12167708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	748
3300031555|Ga0318466_12429412	Not Available	678
3300031555|Ga0318466_13216894	Not Available	531
3300032167|Ga0224413_11050485	Not Available	1034
3300032167|Ga0224413_11769891	Not Available	684
3300032167|Ga0224413_12403954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	532

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	99.19%
Environmental	Environmental	0.81%

Class

Habitat	Taxonomy	Distribution
Mammals	Host-Associated → Mammals	99.19%
Terrestrial	Environmental → Terrestrial	0.81%

Category

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Mammals → Digestive System	99.19%
Soil	Environmental → Terrestrial → Soil	0.81%

Type

Habitat	Taxonomy	Distribution
Large Intestine	Host-Associated → Mammals → Digestive System → Large Intestine	98.39%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	0.81%
Foregut	Host-Associated → Mammals → Digestive System → Foregut	0.81%

Subtype

Habitat	Taxonomy	Distribution
Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal	98.39%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.81%
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen	0.81%

Habitat

Habitat	Taxonomy	Distribution
Goat Feces	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces	96.77%
Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Fecal	1.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.81%
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen	0.81%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300012979	Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung B1 Day 1 Metagenome	Host-Associated
3300012983	Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C2 Day 2 Metagenome	Host-Associated
3300018427	Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 2, Chloramphenicol	Host-Associated
3300018430	Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Bagasse, Gen0, Rep 2, Chloramphenicol	Host-Associated
3300018475	Goat fecal pellet fungal communities from Santa Barbara, California, USA ? pellet 1	Host-Associated
3300018493	Goat fecal pellet fungal communities from Santa Barbara, California, USA ? pellet 3	Host-Associated
3300018494	Goat fecal pellet fungal communities from Santa Barbara, California, USA ? diluted pellet 2	Host-Associated
3300018495	Goat fecal pellet fungal communities from Santa Barbara, California, USA ? pellet 2	Host-Associated
3300018878	Goat fecal pellet fungal communities from Santa Barbara, California, USA ? diluted pellet 1	Host-Associated
3300019378	Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Alfalfa, Gen0, Rep 2, Chloramphenicol	Host-Associated
3300022589	Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Bagasse, Gen0, Rep 2, Chloramphenicol (v2)	Host-Associated
3300022601	Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 2, Chloramphenicol (v2)	Host-Associated
3300022654	Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Alfalfa, Gen0, Rep 2, Chloramphenicol (v2)	Host-Associated
3300022660	Goat fecal pellet fungal communities from Santa Barbara, California, USA ? pellet 2 (v2)	Host-Associated
3300022661	Goat fecal pellet fungal communities from Santa Barbara, California, USA ? diluted pellet 2 (v2)	Host-Associated
3300023371	Goat fecal pellet fungal communities from Santa Barbara, California, USA ? diluted pellet 1 (v2)	Host-Associated
3300024268	Goat fecal pellet fungal communities from Santa Barbara, California, USA ? pellet 2 Spades (v3)	Host-Associated
3300024269	Goat fecal pellet fungal communities from Santa Barbara, California, USA ? diluted pellet 2 Spades (v3)	Host-Associated
3300024270	Goat fecal pellet fungal communities from Santa Barbara, California, USA ? pellet 1 Spades (v3)	Host-Associated
3300024272	Goat fecal pellet fungal communities from Santa Barbara, California, USA ? diluted pellet 1 Spades (v3)	Host-Associated
3300024303	Goat fecal pellet fungal communities from Santa Barbara, California, USA ? pellet 3 Spades (v3)	Host-Associated
3300028242	Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Alfalfa, Gen0, Rep 2, Chloramphenicol (v3)	Host-Associated
3300028454	Goat Fecal Pellet Co-assembly of all samples untreated with antibiotics	Host-Associated
3300028833	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2	Host-Associated
3300029305	Goal Fecal Pellet Co-assembly of all three pellet samples and three diluted pellet samples.	Host-Associated
3300029705	Goat Fecal Pellets diluted in media	Host-Associated
3300031086	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Litter GP-2 (Eukaryote Community Metatranscriptome)	Environmental
3300031555	Goal Fecal Pellet Co-assembly of all three pellet samples and three diluted pellet samples.(v2)	Host-Associated
3300032167	Three Goat Fecal Pellets	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0123348_108561971	3300012979	Fecal	MSNPNMEAKVKELMELKRMKEELDAEIAAVEDEIKSVMG
Ga0123349_103577741	3300012983	Fecal	MEAKVKELMELKRMKEEIEAEIAAAEDDIKAVMGDEETLFAGA
Ga0187903_106365151	3300018427	Goat Feces	MSNPTMEAKVHELMELKRMKEEIEAEITAAEDAIKAVMGDEQFL
Ga0187903_109030941	3300018427	Goat Feces	MSNPNMEAKVKELMELKRMKEELEAEIAATEDEIKSVMGE
Ga0187902_103482221	3300018430	Goat Feces	MSNPNMETKVKELLELKRMKEELEAEITSMEDEIKSVMGE
Ga0187902_108392381	3300018430	Goat Feces	MSNPNMETKVKELLELKRMKEELEAEITSMEDEIKQVM
Ga0187902_111855562	3300018430	Goat Feces	MSNPNMEPKIKELLELKRMKEELEAEITSMEDEIKQVM
Ga0187907_104069915	3300018475	Goat Feces	MSNPNMEIKVKELLELKFMKEELEAEIAGMEDEIKAVMGDEET
Ga0187907_106311753	3300018475	Goat Feces	MSNPNMETKVKELMELKRMKEEIEAEIAAAEDEIKG
Ga0187907_109032845	3300018475	Goat Feces	MSNPNMEAKVKELMELKRMREELDAEISAAEDEIKN
Ga0187907_113312292	3300018475	Goat Feces	MCNPNMEAKVHELMELKRMKEELEAEIAAAEDAIKAVMGDEELLTAG
Ga0187907_115261231	3300018475	Goat Feces	MSNPNMESKVKELMELKRMKEEIEAEIAAAEDEIKK
Ga0187907_117640051	3300018475	Goat Feces	MSNPNLENKVKELLELKRMKEELEAEIAGMEDEIKAVMGDEETL
Ga0187907_122019832	3300018475	Goat Feces	MSNPNMENKVKELLELKRMKEELEAEIATMEDEIK
Ga0187909_101555116	3300018493	Goat Feces	MSNPNMESIVKELLELKRMKEELEAEITAMEDEIKKV
Ga0187909_102067565	3300018493	Goat Feces	MSNPSMEPKIKELLELKRMKEELEAEITSMEDEIK
Ga0187909_104246374	3300018493	Goat Feces	MSNPAMEAKVHELMELKRMKEELDSEIVQIEDEIKAVMGNEE
Ga0187909_105525875	3300018493	Goat Feces	MSNPNMEAKVKELMELKRMKEELEAEITAMEDEIKSVMGDEETLL
Ga0187909_108105604	3300018493	Goat Feces	MSNPTMEATIRELMELKRMKEELEAEISAAEDAIKAVMG
Ga0187909_113527033	3300018493	Goat Feces	MSNPNMETKVKELLELKRMKEELEAEITSMEDEIKQVMG
Ga0187909_114130151	3300018493	Goat Feces	MSNPNMEAKVKELMELKRMKEELEAEIAATEDEIKAVMGQEELLLAG
Ga0187909_114369402	3300018493	Goat Feces	MSNPNMESKIKELMELKRMKEEIEAEIAAAEDEIKSVMGGEETLLAG
Ga0187909_118378572	3300018493	Goat Feces	MSNPNMESQIKELLELKRMKEELEDAITAAEDGIKAAMGDEEILGVRKS
Ga0187909_119400762	3300018493	Goat Feces	MSNPNMEAKVKELMELKRMKEELEAEIAAAEDEIKSVMGEEE
Ga0187911_1006407910	3300018494	Goat Feces	MSNPNMESIVKELLELKRMKEELEAEITAMEDEIK
Ga0187911_106242153	3300018494	Goat Feces	MSNPNMETKVKELLELKRMKEELEAEITSMEDEIKSVMGK
Ga0187911_110412383	3300018494	Goat Feces	MSNPNMEPKIKELLELKRMKEELEAEITSMEDEIKQVMG
Ga0187911_111791703	3300018494	Goat Feces	MSNPNMENKVKELMELKRMKEELEAEIAGMEDEIKAVMGD
Ga0187908_100526311	3300018495	Goat Feces	MSNPTMEAKVHELMELKRMKEEIEAEITAAEDAIKAVMGDEQ
Ga0187908_101730775	3300018495	Goat Feces	MSNPNMEAKVKELMELKRLKEELEAEIAAAEDAIKAVMGDEELLL
Ga0187908_102550901	3300018495	Goat Feces	MSNPNMENKVKELMELKRMKEELEAEITSMEDEIKSV
Ga0187908_109851014	3300018495	Goat Feces	MSDHNMEPKIKELMELKRMREELEAEITTIEDEIKSRMGDE
Ga0187908_115111412	3300018495	Goat Feces	MSNPNMEAKVKELMELKRMKEEIEAEIAAAEDEIKGV
Ga0187908_116361981	3300018495	Goat Feces	MSNPNMETKVKELLELKRMKEELEAEIAGVEDEIKSVM
Ga0187908_116397471	3300018495	Goat Feces	MSNPNMEPKIKELLELKRMKEELEAEITSMEDEIKNVMGDEETLL
Ga0187910_102077345	3300018878	Goat Feces	MSNPNMESKIKELMELKRMKEEIEAEIAAAEDEIK
Ga0187910_102559921	3300018878	Goat Feces	MSNPNMETKVKELLELKRMKEELEAEITSMEDEIKQV
Ga0187910_104743864	3300018878	Goat Feces	MSDHNMEPKIKELIELKRMREELVAEITTIEDEIKSRMGTEE
Ga0187910_116224372	3300018878	Goat Feces	MSNPNMENKVKELMELKRMKEELEAEIAGMEDEIKAVMGDDETLLA
Ga0187910_121264982	3300018878	Goat Feces	MSNPNMEAKVKELMELKRMREELDAEISAAEDEIK
Ga0187910_122198411	3300018878	Goat Feces	MSNPNLEPKVKELMELRRMKEELDNEIASLEDEIKQAMGNEETLIAG
Ga0187901_101916264	3300019378	Goat Feces	MRNPNMEAKVHELMELKRMKEELEAEIAAAEDAIKAV
Ga0187901_103285144	3300019378	Goat Feces	MSNPNMESIVKELLELKRMKEELEAEITAMEDEIKKVMGDEELLT
Ga0187901_107211123	3300019378	Goat Feces	MSNPNMESKIKELMELKRMKEEIEAEIAAAEDEIKGVMGDE
Ga0187901_108838153	3300019378	Goat Feces	MSNPNMEIKVKELLELKRMKEELEAEIAGMEDEIKAVMGEEE
Ga0187901_111280351	3300019378	Goat Feces	MCNPNMEAKVHELMELKRMKEEIEAEIAAAEDAIKA
Ga0187901_111761721	3300019378	Goat Feces	MSNPNLENKVKELLELKRMKEELEAEIAGMEDEIKAVMGDEETLLA
Ga0216346_100621181	3300022589	Goat Feces	MSNPNLEPKIKELMELKRLREEVDAEIAGIEDEIKQGMGNEETLIAGAF
Ga0216346_102723183	3300022589	Goat Feces	MSNPNMEAKVKELMELKRMKEELEAEIAAAEDEIKAVMGE
Ga0216346_106561022	3300022589	Goat Feces	MSNPNLENKVKELLELKRMKEELEAEIAGMEDQIKAVMG
Ga0216345_102143042	3300022601	Goat Feces	MENKVKELMELKRMKEELEAEITSMEDEIKSVMGEEETLL
Ga0216345_105691391	3300022601	Goat Feces	MSNPNMETKVKELLELKRMKEELEAEITSMEDEIKQVMGE
Ga0216347_100949506	3300022654	Goat Feces	MSNPNMENKIKELMELKRMKEELEAEITSMEDEIKSVMG
Ga0216347_102771501	3300022654	Goat Feces	MSNPNMESKVKELMELKRMKEEIEAEIAAAEDEIKKV
Ga0216347_102843913	3300022654	Goat Feces	MSNPNMETKVKELLELKRMKEELEAEITSMEDEIKQ
Ga0216342_108937801	3300022660	Goat Feces	MSNPNMETKVKELLELKRMKEELEAEITSMEDEIKQVIAE
Ga0216342_111433312	3300022660	Goat Feces	MSNPNMENKVKELMELKRMKEELEAEISAMEDEIK
Ga0216339_102317021	3300022661	Goat Feces	MCNPNMEAKVHELMELKRMKEELEAEIAATEDEIKAVMGQ
Ga0216340_102234311	3300023371	Goat Feces	MSNPNMESKIKELMELKRMKEEIEAEIAAAEDEIKGVMGDEETLL
Ga0216340_104806083	3300023371	Goat Feces	MSNPNLEPKVKELMELKRMREELDAEIERLEDQIKQVMGNEETLIAGA
Ga0216340_114342032	3300023371	Goat Feces	VSNPNMEAKVKELMELKRMKEELEAEITAMEDEIKNVMGDEE
Ga0257090_107534451	3300024268	Goat Feces	MSNPNMETKVKELLELKRMKEELEAEITSMEDEIKSV
Ga0257090_114789651	3300024268	Goat Feces	MSNPNMEAKVKELMELKRLKEELEAEIAAAEDAIKAVMGD
Ga0257090_116097543	3300024268	Goat Feces	MSNPNMEPKIKELLELKRMKEELEAEITSMEDEIKQVIAE
Ga0257090_117358862	3300024268	Goat Feces	MSNPTMEAKIRELMELKRMREELDAEIASVEDAIK
Ga0257076_108029634	3300024269	Goat Feces	MSNQSMEVKVKELLELKRMKEELEAEITAVEDEIKTVM
Ga0257076_108429451	3300024269	Goat Feces	MSNPNMETKVKELLELKRMKEELEAEITSMEDEIKSVM
Ga0257076_108800971	3300024269	Goat Feces	MSNPSMETKIKELLELKRMKEELEAEISSMEDEIKQAMGEEE
Ga0257076_115777822	3300024269	Goat Feces	MSNPNLEPTIKELMELRRMKEELDTEITQLEDQIKQSMGNEETLIAGAFKVT
Ga0257076_116929841	3300024269	Goat Feces	MSNQSMEVKVKELLELKRMKEELEAEIAAVEDEIKAV
Ga0257076_117927652	3300024269	Goat Feces	MSNPNMESKVKELMELRRMKEEIEAEIAAAEDEIKSVMGDEETLLAG
Ga0257091_101843721	3300024270	Goat Feces	MSNPNMEAKVKELMELKRMREELDAEISAAEDEIKNVM
Ga0257091_110621691	3300024270	Goat Feces	MSNPNLEPKVRELLELKRMKEELEAEITAAEDEIKSIMGDE
Ga0257091_111743601	3300024270	Goat Feces	MSNPTMEPKIKELLELKRMKEELEAEITAIEDEIKSRMGDEETLLA
Ga0257091_117870591	3300024270	Goat Feces	MSNPNMESIVKELLELKRMKEELEAEITAMEDEIKKVMGDE
Ga0257091_117926781	3300024270	Goat Feces	MSNPSMEAKVRELMELKRMKEELEAEIAAAEDEIKLVM
Ga0257077_100917111	3300024272	Goat Feces	MSNPNMESKIKELMELKRMKEEIEAEIAAAEDEIKGVMGDEETL
Ga0257077_104455413	3300024272	Goat Feces	MRNPNMEAKVHELMELKRMKEELEAEIAAAEDAIKAVMG
Ga0257077_119896841	3300024272	Goat Feces	MSNPNLEPKVRELLELKRMKEELEAEIAAAEDEIKSLMGS
Ga0257077_122629461	3300024272	Goat Feces	MSNPNMEPKIKELLELKRMKEELEAEITSMEDEIKQVMGEEETLL
Ga0257077_125687022	3300024272	Goat Feces	MSNPNMEAKVKELMELKRMREELDAEISAAEDEIKKVMGDEETL
Ga0257089_111015201	3300024303	Goat Feces	MSNPNMESKIKELMELKRMKEEIEAEIAAAEDEIKGVMGDEE
Ga0257089_114916912	3300024303	Goat Feces	MSNPNMEAKVKELMELKRMKEELEAEIAATEDEIKAVMGQEELLL
Ga0257089_115936702	3300024303	Goat Feces	MSDHNMEPKIKELIELKRMREELEAEITTIEDEIK
Ga0302102_104360723	3300028242	Goat Feces	MSNPNMEAKVKELMEFKRMKEEIEAEIAAAEDEIKGVMGTEETLFAGA
Ga0302102_104372791	3300028242	Goat Feces	MSNPSMETKVKELMELKRMKEEIEIEITAAEDAIKAVMG
Ga0302102_105724101	3300028242	Goat Feces	MSNPNMENKIKELMELKRMKEELEAEITSMEDEIK
Ga0302102_108405243	3300028242	Goat Feces	MSNPNMEAKVKELMELKRMKEELEAEIAAAEDEIKSVMGEEEILNA
Ga0302102_113082512	3300028242	Goat Feces	MSNPNMESIVKELLELKRMKEELEAEITAMEDEIKKVMGDEE
Ga0307245_13502222	3300028454	Goat Feces	MSNPNMEAKVKELMELKRLKEELEAEIAAAEDAIKAVMGDEEQVALVLLH
Ga0247610_116820162	3300028833	Rumen	MESKVRELVELKKMAQELEDEITMIEDEIKQVMGTEEVLMAGQY
Ga0307249_104148107	3300029305	Goat Feces	MSDQNMETKVKELMELKRMKEEIEAEIESAEDEIKKVIPQH
Ga0307249_105685783	3300029305	Goat Feces	MSNPTLESRVKELLELKRMREEIDSEISTIEDELKKAMGNEETLIAGAFKL
Ga0307249_106791015	3300029305	Goat Feces	MSNPNMEGKIKELMELKRMKEEIEVEIAAAEDEIKSVMG
Ga0307249_106792444	3300029305	Goat Feces	MSNPSMEARVKELMELKRMKEELDNEITAIEDEIKSVMGDEEILLA
Ga0307249_125383403	3300029305	Goat Feces	MSNPNMESKVKELMELRRMKEEIEAEIAAAEDEIKG
Ga0307249_126290641	3300029305	Goat Feces	MSNQSMEAKVKELMELKRMKEELEAEIAAAEDEIKA
Ga0307249_129913902	3300029305	Goat Feces	MSNPNLEPKVRELLELKRMKEELEAEIAAAEDEIKSLMGSEETLL
Ga0307249_130324192	3300029305	Goat Feces	MSNPNMEAKVKELMELKRMREELDAEIAAAEDEIK
Ga0307249_130377631	3300029305	Goat Feces	MSNPNMESKVKELMELRRMKEEIEAEIAAAEDEIKGVMG
Ga0307249_130556881	3300029305	Goat Feces	MSNPNLEPKVRELLELKRMKEELEAEITAAEDEIKSIMGD
Ga0307249_134813772	3300029305	Goat Feces	MSNPNMENKVKELLELKRMKEELEAEIATMEDEIKSVM
Ga0224414_103794491	3300029705	Goat Feces	MSNQSMEVKVKELMELKRMKEELEAEIAAAEDEIKKVMG
Ga0224414_115442932	3300029705	Goat Feces	MSNPNMENKVKELMELKRMKEELEAEITSMEDEIKSVM
Ga0224414_118433682	3300029705	Goat Feces	MSNPNMEPKIKELLELKRMKEELEAEITSMEDEIKQVMGDEET
Ga0224414_119173491	3300029705	Goat Feces	MSNPNLEPKIKELLELKRLKEELEAEIAGMEDEIKA
Ga0224414_120848631	3300029705	Goat Feces	MSNPNMEDKVKELMELKRMKEELEAEIAAAEDEIKSVMGDEETL
Ga0224414_121690321	3300029705	Goat Feces	MSNPNMEAKVKELMELKRMKEELEAEITAMEDEIKS
Ga0224414_122517962	3300029705	Goat Feces	MSDHNLEPKVKELLELKRMKEELEAEITAIEDEIKGRM
Ga0074002_138876682	3300031086	Soil	MSNPNMEAKVKELMELKRMREELDAEISAAEDEIKNVMGAEETLFA
Ga0318466_103578498	3300031555	Goat Feces	MSNPNMENKVKELLELKRMKEELEAEITSMEDEIKSVMGDEE
Ga0318466_106480243	3300031555	Goat Feces	MSNPNLEPRIRELLELKRMKEEIEQEISSMEDEIKSIMGDEETL
Ga0318466_109610671	3300031555	Goat Feces	MSNPNMENKVKELLELKRMKEELEAEITSMEDEIKSVMG
Ga0318466_109641301	3300031555	Goat Feces	MSNPSMEARVKELMELKRMKEELDNEITAIEDEIK
Ga0318466_110562643	3300031555	Goat Feces	MCDHNMESKVKDLMELRRMKEELEAEISAAEDEIKA
Ga0318466_113263881	3300031555	Goat Feces	MSNPNMENKVKELLELKRMKEELEAEISAMEDEIKQ
Ga0318466_114385973	3300031555	Goat Feces	MSNPNMESIVKELLELKRMKEELEAEITAMEDEIKKVMGDEELLTA
Ga0318466_117063633	3300031555	Goat Feces	MSNPSMENKVKELLELKRMKEEIEAEITGMEDEIKAIMQNAR
Ga0318466_121677081	3300031555	Goat Feces	MSNPNMESKVKELMELRRMKEEIEAEIAAAEDEIK
Ga0318466_124294121	3300031555	Goat Feces	MSNPNMEAKVKELMELKRMKEELEAEIAAAEDEIKSVMGEEEIL
Ga0318466_132168942	3300031555	Goat Feces	MSNPNMEAKVKELMELKRMKEELEAEITAMEDEIKAVMGDEET
Ga0224413_110504851	3300032167	Goat Feces	MSNPTLEPKIKELLELKRMKEELEAEITAMEDEIKQVMGNEETLLAP
Ga0224413_117698912	3300032167	Goat Feces	MSNPSMEPKIKELLELKRMKEELETEIISMEDEIKQAMGD
Ga0224413_124039542	3300032167	Goat Feces	MCNPNMEAKVHELMELKRMKEELEAEIAAAEDAIKAV