NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028452

3300028452: Goat Fecal Pellet Co-assembly of all samples treated with chloramphenicol from Gen5 and Gen10



Overview

Basic Information
IMG/M Taxon OID3300028452 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0118397 | Gp0242245 | Ga0307247
Sample NameGoat Fecal Pellet Co-assembly of all samples treated with chloramphenicol from Gen5 and Gen10
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size586074121
Sequencing Scaffolds17
Novel Protein Genes17
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix6
All Organisms → cellular organisms → Eukaryota1
Not Available7
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E21

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDetermining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: California
CoordinatesLat. (o)34.4149Long. (o)-119.841Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018675Metagenome233Y
F037234Metagenome / Metatranscriptome168Y
F041048Metagenome160Y
F046107Metagenome / Metatranscriptome151Y
F054617Metagenome139Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0307247_10018706All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix2997Open in IMG/M
Ga0307247_10020862All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix2768Open in IMG/M
Ga0307247_10056491All Organisms → cellular organisms → Eukaryota1243Open in IMG/M
Ga0307247_10067148All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix1108Open in IMG/M
Ga0307247_10075108Not Available1034Open in IMG/M
Ga0307247_10089204Not Available936Open in IMG/M
Ga0307247_10089681All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae933Open in IMG/M
Ga0307247_10110253All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2833Open in IMG/M
Ga0307247_10144354All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix723Open in IMG/M
Ga0307247_10166530All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix672Open in IMG/M
Ga0307247_10173812Not Available658Open in IMG/M
Ga0307247_10187462Not Available634Open in IMG/M
Ga0307247_10247402Not Available552Open in IMG/M
Ga0307247_10250690Not Available548Open in IMG/M
Ga0307247_10259752Not Available539Open in IMG/M
Ga0307247_10278887All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae519Open in IMG/M
Ga0307247_10295427All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix504Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0307247_10018706Ga0307247_100187063F046107MYFGKLYYAGIFPFLTNKKEIKPRSNIFKIDSVVSTKLFPDSSFIELLGQDSSFVEIDDDPVLSLCLISTTSTLLDKFGILQYLSNNSSNE
Ga0307247_10020862Ga0307247_100208622F046107MYFGKLYYAGIFPFLKNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGRDSSFVAIDDDPVLSLCLISTTSTLLDKFGILQYLSNNSSNELLMIGIALVKNSAKPTIFGTGDSSVH
Ga0307247_10056491Ga0307247_100564911F046107MCFGKLYYAGIFPFLTNKKEIKPRSNIFKIDSVVSTKLSPNSSFIELVGRDSSFLEIDEDPVLSLCLISTTSTLLDKFGILQYLSNNSSNELLMIGIALVK
Ga0307247_10067148Ga0307247_100671481F046107YAGIFPFLKNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGQDSSFVEIDDDPVLSLCFISMTSTLLDKFGILQYLSNNSSNELLMIGIALV
Ga0307247_10075108Ga0307247_100751081F037234MSKYLGLDPKASDLTMVRVIKARTGYRCIDIRRTV
Ga0307247_10089204Ga0307247_100892041F046107MYFGKLYYAGIFPFLTNKKEIKPRSNIFKKDSVVSTKLSSDLSFIELLGRDSPFVEIDDDPVFSLCLISTTSTLLVKFGIL
Ga0307247_10089681Ga0307247_100896812F046107MYFGKLYYAGIFPFLTNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGQDSSFVEIDDDPVLSLCLISKTSTLLDKFGILQYLSNNSSNELIMIGIAFVKNSAKPTIFGTG
Ga0307247_10110253Ga0307247_101102532F046107FSKLYYAGIFPFLTNKKEIKPRSNIFKIDNVVSTKLSPDSSFIELLGQDSSFVKIDADPVLSLCLISTTSTLLDKFGNLQYLSNNSSNELLMIGIALYYFVFNRIEXNIFFI
Ga0307247_10144354Ga0307247_101443541F046107FPFLTNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELQGRDSPFVEIDDDPVLSLCLISTTSTFLDKFGNLQYLSNNSSNELLMIGIA
Ga0307247_10166530Ga0307247_101665301F046107MYFGKLYYAGIFPFLTNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGQDSSFVEIDDDPVLSLCLISMTSTLLDKFGILQYLSNNSSNELIMIGIAFVKNSAKPTIFGTG
Ga0307247_10173812Ga0307247_101738121F041048MNFLKQQKLKIKLTKSRRRNQILRQFLAEELLVMFLIRLQKIVQKLTSLSIN
Ga0307247_10187462Ga0307247_101874621F018675REQKKIKKICEDENIQFNFLWTKIKIRYIFKDEKLI
Ga0307247_10247402Ga0307247_102474021F054617MVLSALFKYWCILHYHKYKVKYNELRAMKVILIRVIKEKKVIN
Ga0307247_10250690Ga0307247_102506901F046107MYFGKLYYAGIFPILTNKKKKKEIKPKSNIIKIDSVVSTKLSPDSSSIELLGRDSPFVEIDDDPVLSLCLISTTSTLLVS
Ga0307247_10259752Ga0307247_102597521F054617MVLNIFVMYWCILHYYKCKVKYIELRMMKVVLIRLIK
Ga0307247_10278887Ga0307247_102788872F046107GKLYYAGIFPFLTNKKEIKPRSNIFIIDSVVSTKLSPGSSFIELLGRDSSFVEIDADPVLSLCLISTTSTLLDKFGICNTYQIIAQTNYL
Ga0307247_10295427Ga0307247_102954271F046107MYFGKLYYTGIFPFLTNKKKIKLRSNIFKIDSVVSTKLFPDSSFIELLGRDSSFVEIDDDPVLSLCLISTTSTLLVKFGILQYLSNNSSNELLMIGIALVKNSAKPTIFGTGDSDEPL

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