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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028452 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118397 | Gp0242245 | Ga0307247 |
| Sample Name | Goat Fecal Pellet Co-assembly of all samples treated with chloramphenicol from Gen5 and Gen10 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 586074121 |
| Sequencing Scaffolds | 17 |
| Novel Protein Genes | 17 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix | 6 |
| All Organisms → cellular organisms → Eukaryota | 1 |
| Not Available | 7 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae | 2 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: California | |||||||
| Coordinates | Lat. (o) | 34.4149 | Long. (o) | -119.841 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F018675 | Metagenome | 233 | Y |
| F037234 | Metagenome / Metatranscriptome | 168 | Y |
| F041048 | Metagenome | 160 | Y |
| F046107 | Metagenome / Metatranscriptome | 151 | Y |
| F054617 | Metagenome | 139 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0307247_10018706 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix | 2997 | Open in IMG/M |
| Ga0307247_10020862 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix | 2768 | Open in IMG/M |
| Ga0307247_10056491 | All Organisms → cellular organisms → Eukaryota | 1243 | Open in IMG/M |
| Ga0307247_10067148 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix | 1108 | Open in IMG/M |
| Ga0307247_10075108 | Not Available | 1034 | Open in IMG/M |
| Ga0307247_10089204 | Not Available | 936 | Open in IMG/M |
| Ga0307247_10089681 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae | 933 | Open in IMG/M |
| Ga0307247_10110253 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2 | 833 | Open in IMG/M |
| Ga0307247_10144354 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix | 723 | Open in IMG/M |
| Ga0307247_10166530 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix | 672 | Open in IMG/M |
| Ga0307247_10173812 | Not Available | 658 | Open in IMG/M |
| Ga0307247_10187462 | Not Available | 634 | Open in IMG/M |
| Ga0307247_10247402 | Not Available | 552 | Open in IMG/M |
| Ga0307247_10250690 | Not Available | 548 | Open in IMG/M |
| Ga0307247_10259752 | Not Available | 539 | Open in IMG/M |
| Ga0307247_10278887 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae | 519 | Open in IMG/M |
| Ga0307247_10295427 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix | 504 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0307247_10018706 | Ga0307247_100187063 | F046107 | MYFGKLYYAGIFPFLTNKKEIKPRSNIFKIDSVVSTKLFPDSSFIELLGQDSSFVEIDDDPVLSLCLISTTSTLLDKFGILQYLSNNSSNE |
| Ga0307247_10020862 | Ga0307247_100208622 | F046107 | MYFGKLYYAGIFPFLKNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGRDSSFVAIDDDPVLSLCLISTTSTLLDKFGILQYLSNNSSNELLMIGIALVKNSAKPTIFGTGDSSVH |
| Ga0307247_10056491 | Ga0307247_100564911 | F046107 | MCFGKLYYAGIFPFLTNKKEIKPRSNIFKIDSVVSTKLSPNSSFIELVGRDSSFLEIDEDPVLSLCLISTTSTLLDKFGILQYLSNNSSNELLMIGIALVK |
| Ga0307247_10067148 | Ga0307247_100671481 | F046107 | YAGIFPFLKNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGQDSSFVEIDDDPVLSLCFISMTSTLLDKFGILQYLSNNSSNELLMIGIALV |
| Ga0307247_10075108 | Ga0307247_100751081 | F037234 | MSKYLGLDPKASDLTMVRVIKARTGYRCIDIRRTV |
| Ga0307247_10089204 | Ga0307247_100892041 | F046107 | MYFGKLYYAGIFPFLTNKKEIKPRSNIFKKDSVVSTKLSSDLSFIELLGRDSPFVEIDDDPVFSLCLISTTSTLLVKFGIL |
| Ga0307247_10089681 | Ga0307247_100896812 | F046107 | MYFGKLYYAGIFPFLTNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGQDSSFVEIDDDPVLSLCLISKTSTLLDKFGILQYLSNNSSNELIMIGIAFVKNSAKPTIFGTG |
| Ga0307247_10110253 | Ga0307247_101102532 | F046107 | FSKLYYAGIFPFLTNKKEIKPRSNIFKIDNVVSTKLSPDSSFIELLGQDSSFVKIDADPVLSLCLISTTSTLLDKFGNLQYLSNNSSNELLMIGIALYYFVFNRIEXNIFFI |
| Ga0307247_10144354 | Ga0307247_101443541 | F046107 | FPFLTNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELQGRDSPFVEIDDDPVLSLCLISTTSTFLDKFGNLQYLSNNSSNELLMIGIA |
| Ga0307247_10166530 | Ga0307247_101665301 | F046107 | MYFGKLYYAGIFPFLTNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGQDSSFVEIDDDPVLSLCLISMTSTLLDKFGILQYLSNNSSNELIMIGIAFVKNSAKPTIFGTG |
| Ga0307247_10173812 | Ga0307247_101738121 | F041048 | MNFLKQQKLKIKLTKSRRRNQILRQFLAEELLVMFLIRLQKIVQKLTSLSIN |
| Ga0307247_10187462 | Ga0307247_101874621 | F018675 | REQKKIKKICEDENIQFNFLWTKIKIRYIFKDEKLI |
| Ga0307247_10247402 | Ga0307247_102474021 | F054617 | MVLSALFKYWCILHYHKYKVKYNELRAMKVILIRVIKEKKVIN |
| Ga0307247_10250690 | Ga0307247_102506901 | F046107 | MYFGKLYYAGIFPILTNKKKKKEIKPKSNIIKIDSVVSTKLSPDSSSIELLGRDSPFVEIDDDPVLSLCLISTTSTLLVS |
| Ga0307247_10259752 | Ga0307247_102597521 | F054617 | MVLNIFVMYWCILHYYKCKVKYIELRMMKVVLIRLIK |
| Ga0307247_10278887 | Ga0307247_102788872 | F046107 | GKLYYAGIFPFLTNKKEIKPRSNIFIIDSVVSTKLSPGSSFIELLGRDSSFVEIDADPVLSLCLISTTSTLLDKFGICNTYQIIAQTNYL |
| Ga0307247_10295427 | Ga0307247_102954271 | F046107 | MYFGKLYYTGIFPFLTNKKKIKLRSNIFKIDSVVSTKLFPDSSFIELLGRDSSFVEIDDDPVLSLCLISTTSTLLVKFGILQYLSNNSSNELLMIGIALVKNSAKPTIFGTGDSDEPL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |