3300028237: Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen10, Rep 2, Chloramphenicol (External Submission)

Overview

Basic Information

• IMG/M Taxon OID: 3300028237
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118397 | Gp0242259 | Ga0302338
• Sample Name: Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen10, Rep 2, Chloramphenicol (External Submission)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 264326577
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	4
Not Available	4
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Aegilops → Aegilops tauschii → Aegilops tauschii subsp. strangulata	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Glomeromycotina → Glomeromycetes → Diversisporales → Diversisporaceae → Diversispora → Diversispora epigaea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 34.4149
  • Long. (^o): -119.841
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002654	Metagenome / Metatranscriptome	539	Y
F046107	Metagenome / Metatranscriptome	151	Y
F098130	Metagenome / Metatranscriptome	104	Y
F105011	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0302338_1002612	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	7935
Ga0302338_1003325	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	7161
Ga0302338_1020258	Not Available	2442
Ga0302338_1024925	Not Available	1995
Ga0302338_1025140	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	1978
Ga0302338_1044796	Not Available	1005
Ga0302338_1045907	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	976
Ga0302338_1046273	Not Available	967
Ga0302338_1055192	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Aegilops → Aegilops tauschii → Aegilops tauschii subsp. strangulata	783
Ga0302338_1055549	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Glomeromycotina → Glomeromycetes → Diversisporales → Diversisporaceae → Diversispora → Diversispora epigaea	778

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0302338_1002612	Ga0302338_10026121	F046107	MYFGKLYYAGIFLFLTNKKEIKPRCNIFKIDSVVSTKLSPDLSFIELLGRDSPFVEIDDDPVLSLCLISTTSMLLVKFGILQYLSNNSSNELLMI
Ga0302338_1003325	Ga0302338_10033256	F046107	RSNIFKIDSVVSTKLSPDSSFIELLGQDSSFVEIDDDPVLSLCLISTTSTLLDKFGIFQYLSNNSSNELLMIGIALVKNSAKPTIFGTGDSDINKIIM
Ga0302338_1020258	Ga0302338_10202582	F046107	MKKKKKIKPKSKIFKIDSVVSTELFPDSSFIELLRRDSAFVEMDDDPALSLCLINATLTLLVKFGSLEYLSINSSNELLMIGITLVKKLRYSAKPTIFWNMVTQMNL
Ga0302338_1024925	Ga0302338_10249252	F105011	MLNLFEKENNDLKAKLKRSEDLRLQCLEEKMKLDLKLADVVDDHQIKMDAMRLKIKKIRKYAINQEAWYHYVVGSVITLVAILIAFFVGFKFFR
Ga0302338_1025140	Ga0302338_10251401	F046107	MYFGKLYYAGIFPFLTNKKVIKPRSNIFKIDSVVSTKLSPDSSFIELLGRDSPFVEIDDNPVLSLCLISTTSTLLVKFGNLEYLSNNSS
Ga0302338_1044796	Ga0302338_10447961	F046107	MYFGKLYYAGIFPFLTNKKEIKPKSNIFKIDSVVCTKLSLDSSFIELLGQDSPFVEKDDDPVLSLCLISTTSTLLDKFGILQ
Ga0302338_1045907	Ga0302338_10459071	F046107	MYFGKLYYAGIFPFLSNKKEIKFRSNILKIDSVVSTKLSPDSSFIELLGRESPFVVIDDNPVLSLCLISTTATLLVKFDILQYLSNNSSKN
Ga0302338_1046273	Ga0302338_10462731	F046107	MYFGKLYYAGIFPFLTNKKEIKPRSNIFKIDSVVTTKLSPDSSFIELLGRDSPFVEIDDDPVLSLCLISTTSTLLVKFGNLEYLSNNSLNEQLMIGIALVKNL
Ga0302338_1055192	Ga0302338_10551921	F098130	MPDPHPRRRLGGDDPFERRHVRDWAPPGWHWEVLPSGARNLVRNRGLVVDPELLWWQSRGPLAVQREPAPEEVVRRRVREEDEHVRRYMVALDDRFSNTWQFLQGSHPSYVPVMVPSLWVMTARGSGTGRRRPV
Ga0302338_1055549	Ga0302338_10555491	F002654	MLNYQTFNEKVVCQKGNSPEQVFKVPKFLLSESKEVFKLYNQEIGLEAAIF