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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028236 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118397 | Gp0242257 | Ga0302336 |
| Sample Name | Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen10, Rep 2, Chloramphenicol (External Submission) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 365694745 |
| Sequencing Scaffolds | 10 |
| Novel Protein Genes | 11 |
| Associated Families | 4 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2 | 2 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae | 1 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Castanea → Castanea mollissima | 1 |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica | 2 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: California | |||||||
| Coordinates | Lat. (o) | 34.4149 | Long. (o) | -119.841 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F046107 | Metagenome / Metatranscriptome | 151 | Y |
| F049431 | Metagenome / Metatranscriptome | 146 | N |
| F050939 | Metagenome | 144 | Y |
| F092231 | Metagenome | 107 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0302336_10003386 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2 | 6605 | Open in IMG/M |
| Ga0302336_10008578 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae | 4251 | Open in IMG/M |
| Ga0302336_10014412 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2 | 3061 | Open in IMG/M |
| Ga0302336_10018237 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Castanea → Castanea mollissima | 2559 | Open in IMG/M |
| Ga0302336_10021695 | Not Available | 2196 | Open in IMG/M |
| Ga0302336_10030211 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica | 1563 | Open in IMG/M |
| Ga0302336_10033954 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix | 1363 | Open in IMG/M |
| Ga0302336_10047202 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica | 954 | Open in IMG/M |
| Ga0302336_10089259 | Not Available | 594 | Open in IMG/M |
| Ga0302336_10092947 | Not Available | 581 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0302336_10003386 | Ga0302336_100033861 | F046107 | KKEIKPRSNIFKIDSVVSIKLSPDSSFIELLGQDSSFVEIDADPVLSLCLISTTSTLLDKFGILQYLSNNSSNELLMIGSDFLI |
| Ga0302336_10008578 | Ga0302336_100085784 | F046107 | MEIIEKMKLEIIHILKKLENTMYFSKLYYAGIFSFLTNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGRDSSFVEIDDDPVLSLCLISTTSTLLVKFGILQYLSNNSSNELLMIGIALVKNSAKPTIFGTGDS |
| Ga0302336_10014412 | Ga0302336_100144123 | F046107 | MYFGKLYYAGIFLFLTNKKEIKPRSNIFKIDSVVSTKLSPDLSFIELLGRDSPFVEIDDDPVLSLCLISTTSMLLVKFGILQYLSNNSSNELLMI |
| Ga0302336_10018237 | Ga0302336_100182371 | F049431 | MTTGRINQVTIVNPSAEANERTPRRRPDVPDGREKPKRPQPQASEAYKTPKPRATDSIAPTEFPKLRSATGGTRLLHRLLPRHIRPSGGEDSSQVNAQARVLDRAIPEDLVKRLAKPAIHRPQMVPASRKTSRTSVPPTSALQ |
| Ga0302336_10021695 | Ga0302336_100216951 | F046107 | MYFSKLYYAGIFPFLKNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGQDSSFVEIDADPVLSLCLISTTSTLLDKFGILQYL |
| Ga0302336_10030211 | Ga0302336_100302112 | F092231 | MQFPWPIQVDDFVPYAERLGWKPTSLPDEFSVCPDNDDEITILSSDRDGNVRNLFLSMASNEAEDAEGAAELNDHFVSCVVAGREAWGEPFLLEAGDGPGVTWRFPGDMFTQVTRGSRAVLFNFFTPQGKYQFV |
| Ga0302336_10030211 | Ga0302336_100302113 | F092231 | MIIFPPQEFITWANMLVQFPWPIQLNDFPPYAERLAWKATLRSTWFNVLPGNNNKFAMLGSNKEGNVYNLYLHMAVNEADDVEGAVELNDHLVSCVAAGRKEWGEPFPLEAGDDPTATWRFPGDMFAQVTGGFTAVLFQFFTPEGRWYFL |
| Ga0302336_10033954 | Ga0302336_100339541 | F046107 | MHLGKLYYAKIFPFLTNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGRDSPFVEIDDALVLSLCLISTTSTLLVKFGILQYLSNNSSNELLMIGIA |
| Ga0302336_10047202 | Ga0302336_100472022 | F092231 | MIIFPPQKFITWTDTLTQFPWPIQVDDFAPYAKQLGWTPTSRPTWFNVSPDGDGEVTLISGDREGHVRNLFLRAAANEAKNTAGAAELNDHFVSCVAAGRKEWGEPFLLEAGDGPGVTWRFPGDMFAQVTGGSTAVLFRFFTPQGQWYFL |
| Ga0302336_10089259 | Ga0302336_100892591 | F046107 | ENTMYFGKLYYAGIFPFLSNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGRDSSFVAIDDDPVLSLCLISKTSTLLDKFGILQYLSNNSSNESSYLIILIKRKFY |
| Ga0302336_10092947 | Ga0302336_100929471 | F050939 | MCDQNNLNDQSVTNLKLKGLMCDQNNLNDQYVTNIKLKGPLV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |