NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300028071

3300028071: Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Atlam_RepA_8d



Overview

Basic Information
IMG/M Taxon OID3300028071 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0133460 | Gp0293409 | Ga0255216
Sample NameFreshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Atlam_RepA_8d
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size132265979
Sequencing Scaffolds37
Novel Protein Genes40
Associated Families38

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage8
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales1
All Organisms → Viruses → Predicted Viral4
Not Available18
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED2401
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED691

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biomeriverriver water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Louisiana
CoordinatesLat. (o)29.8571Long. (o)-89.9778Alt. (m)N/ADepth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003332Metagenome493Y
F003768Metagenome469Y
F006843Metagenome363Y
F011385Metagenome / Metatranscriptome291Y
F016270Metagenome / Metatranscriptome248N
F018538Metagenome / Metatranscriptome234Y
F018920Metagenome232Y
F020340Metagenome / Metatranscriptome224Y
F023494Metagenome / Metatranscriptome210Y
F023835Metagenome / Metatranscriptome208N
F023838Metagenome208N
F037068Metagenome / Metatranscriptome168N
F039171Metagenome / Metatranscriptome164Y
F041091Metagenome160N
F041164Metagenome / Metatranscriptome160N
F042314Metagenome158N
F043698Metagenome / Metatranscriptome156Y
F046203Metagenome / Metatranscriptome151Y
F046254Metagenome151Y
F046365Metagenome / Metatranscriptome151Y
F047509Metagenome / Metatranscriptome149N
F048971Metagenome147Y
F051091Metagenome144N
F051795Metagenome143Y
F053140Metagenome141Y
F057897Metagenome / Metatranscriptome135N
F061856Metagenome / Metatranscriptome131Y
F068611Metagenome124Y
F071157Metagenome / Metatranscriptome122Y
F074787Metagenome / Metatranscriptome119Y
F077243Metagenome / Metatranscriptome117N
F078620Metagenome / Metatranscriptome116N
F079805Metagenome / Metatranscriptome115Y
F086641Metagenome / Metatranscriptome110N
F088766Metagenome / Metatranscriptome109Y
F089854Metagenome / Metatranscriptome108N
F091973Metagenome / Metatranscriptome107Y
F097250Metagenome / Metatranscriptome104N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0255216_1005355All Organisms → cellular organisms → Bacteria2545Open in IMG/M
Ga0255216_1006149All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2335Open in IMG/M
Ga0255216_1006315All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.2296Open in IMG/M
Ga0255216_1006411All Organisms → cellular organisms → Bacteria2273Open in IMG/M
Ga0255216_1009207All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales1804Open in IMG/M
Ga0255216_1009213All Organisms → Viruses → Predicted Viral1804Open in IMG/M
Ga0255216_1013689All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1395Open in IMG/M
Ga0255216_1013928All Organisms → Viruses → Predicted Viral1378Open in IMG/M
Ga0255216_1014515Not Available1340Open in IMG/M
Ga0255216_1015940Not Available1258Open in IMG/M
Ga0255216_1017416All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1187Open in IMG/M
Ga0255216_1020867All Organisms → Viruses → Predicted Viral1054Open in IMG/M
Ga0255216_1021415All Organisms → Viruses → Predicted Viral1035Open in IMG/M
Ga0255216_1022535Not Available1001Open in IMG/M
Ga0255216_1023555All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage972Open in IMG/M
Ga0255216_1024760Not Available939Open in IMG/M
Ga0255216_1026072Not Available907Open in IMG/M
Ga0255216_1029381All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage837Open in IMG/M
Ga0255216_1030287All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage820Open in IMG/M
Ga0255216_1032678Not Available780Open in IMG/M
Ga0255216_1035227Not Available743Open in IMG/M
Ga0255216_1036979Not Available720Open in IMG/M
Ga0255216_1040322Not Available680Open in IMG/M
Ga0255216_1042741Not Available654Open in IMG/M
Ga0255216_1047038Not Available614Open in IMG/M
Ga0255216_1047587All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia609Open in IMG/M
Ga0255216_1048302Not Available603Open in IMG/M
Ga0255216_1048649Not Available600Open in IMG/M
Ga0255216_1053075All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED240566Open in IMG/M
Ga0255216_1055277All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69551Open in IMG/M
Ga0255216_1057526Not Available537Open in IMG/M
Ga0255216_1058859All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage529Open in IMG/M
Ga0255216_1061122All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage517Open in IMG/M
Ga0255216_1061680Not Available514Open in IMG/M
Ga0255216_1062138Not Available511Open in IMG/M
Ga0255216_1062273Not Available511Open in IMG/M
Ga0255216_1063943Not Available502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0255216_1005355Ga0255216_10053556F086641MTVDFKPATFRGFRNVAETRTYPLSEGYTDTDVSRGGHRYWLAPGGVKKVGQEVLGDRVVGTVVTGTVRLTLEHDDVPTFHLDLKTHTVSLGDRVQEAAR
Ga0255216_1006149Ga0255216_10061492F003332MAGVAVVASGNYDLEIDTGFVQDAFLLDDATAGLLNNTQYVLDGTTQFASVLDGVNQVNVRRGRRDQGDQFSAGTMTFTMLDTDGIFMPFDEDSPYYDTAEAKPGLAPMRQVRLSRYSATNVKEYLFKGVIVNFNYNFALGGLDTVTVYCADDFYLLAQTYIDGFNPVEQLSSARLTAILDRPEVDYPAATRNISTGTQTLGGSSAFTIPQSTNVLGYCSQINEAEQGRLFISRDGDLTFQPRVGTTLDPSVADFSELGADIPYNGLGITFEADGVTNRAVVQILGNTTAQVADDTGSQ
Ga0255216_1006315Ga0255216_10063151F051795MIRLTPSQITVDAAAAEGLPSRSISGVAVTYDETAVVNDGTKVRFL
Ga0255216_1006411Ga0255216_10064113F089854MLKKLLMAGWVALAGATGLLAQTKTDSFSEIIGENTQSLLGITRLIVVGIPGITEMSIDNPRTDPATGKLSEGTGFIRWNKWGALRVEDVEVKDGKLELKVVGMLPTRNFIQRKGSADAIEVRFIMSIGSGGVEQSGFNVTVPEAQVPGGAISVKDIFVTYNPPEIAMGALFQIGDGRGIGASFALSDGNLNGLSLRGTDLNWRLGASGSRIDKLDVGFGNIQNPPWYIDGGFTVIVGETRVAGRWPLEVEARGRFYSDYRVDIRGSAMIAGIP
Ga0255216_1009207Ga0255216_10092071F023494MKGKAALNRAFVSFPQLNRLVTTTNFIDKKTHMGELLFATSFQLNQLSKLKTKELG
Ga0255216_1009213Ga0255216_10092135F006843VTGFNLDNYVDVPTRLGMALTKYPDLRIQETQREIIEMPDKSCFIRCTVTVWRDANDP
Ga0255216_1013689Ga0255216_10136892F077243MNLHEAAALSAAKDVIEQAQTTSALEQRALAIVNLSIELHKKAIDLRLQAEEILKEIRFQ
Ga0255216_1013928Ga0255216_10139284F074787MPASTTIEVVGVKQTINSLRKIDPQLQKDFKADATQIAQPAIQ
Ga0255216_1014515Ga0255216_10145151F048971NGESLERHNWGNNPIKLKHIPKNINLPSFEEDLLNSLNLEDNEKSIVELLWGDIQLGKRVQACIIMWISVHILKRPVLYIFRNLTIDQKQLQDDIVGTENYNFNIQFIKSLFQEFNSELQEYFDENNVEYWKDYKLPELKDINSNDIINKLSNKEAINSNDIFCCLMNHTQLAKINTKFSEYIYYNDELVNITTLVDESDLMSPTSSNDRSNDNDKKDSTACEILLAKIYKKVKYALHITGTAHSLLYNITTRLSDHTDIQIKISKVHKMKRSNDYFGLFNNSISFNTTLVEAWWDYQDKENHKKKTCYDIVEDYNINIKKIIEKILERPIIKYNSLLISEEKIRTNQFCLVDKIINDFPNLFIVIYHGNCLRLYFSKKYEKEVKYWSKWDSKQSSTSQRLWQSGGIYGSSIDTEKSEKLPNNYCYFNINTKILNIKLVYKLLRIL
Ga0255216_1015940Ga0255216_10159401F043698MADVLKPLPAIVTDTYANKAPRISDQSKPRKLNLDVVDPSPTSNGDTVDPKTLQVRRTFKDAAQAHSAYRRLKQQNVERNRKNQLIQKKLNNEPPYSAKKLESMGQNWRSNRPTGFLSTMVSRIQPPFKQVIEQAPTLTYTKYPVEGVDSENKTKIFREEITKCIRGWKGHDDIVAQVVHENTTF
Ga0255216_1017416Ga0255216_10174161F016270MDLSYRWLNQKKLGKQDGRKASLAFIVKCLENADHLGIQLVIDYQLQRSWKCDRGTWQPLPSVEQGDWYHIEIDPHVANDAMIAKQRWITVFGVFPTSP
Ga0255216_1020867Ga0255216_10208673F041091MSEWKTQQQVYDELRNDILEEVAVEIEKMKCFGNDTLSSFAIFIRG
Ga0255216_1021415Ga0255216_10214151F051091SRNEVEAAQSRQPTGRLAPVVPMHDVEVPFPDEPQREYATPKQMGMMRALANGQGLKGDDLKTFISATLNREVQTSGELTKRDISKVIDALKASEPK
Ga0255216_1022535Ga0255216_10225352F053140QLVTRAYDTDNLNHFQRRIYLDVATNRPKFSAAAFTEGASEESTLLTDQTYSRSETWKFADSAYDLTNANNDYNRAYRKDYSTGPDSVQPGTGFEPEMVQEFRLPLITRRQGRLSWIEVTNTQGFISVMSLGYETRAGQRANLVQV
Ga0255216_1023555Ga0255216_10235551F079805MPASTTIEVVGVKQTINSLRKIDPQLQKDFKADATAIAQPAINAGKAVYKDLPLSGMRYAWTQNARKIFPFVPSKAANGVKMRFDTRRNA
Ga0255216_1023555Ga0255216_10235553F046365GLQSNSATLTLYASYASSESYALLSVLVGTKCYIKVTPASGANTATNPGFELTNTFLSALPVVNANLGELSTYDIELVGGSYTVDVT
Ga0255216_1024760Ga0255216_10247603F046203MAGQKNWDVDQDTTFTFVVEYKDPDDAIIDLTGATAKMQVRDATGQKLAFTLTSPSGGITIDGALGKVT
Ga0255216_1026072Ga0255216_10260722F078620PHDETFMYHGVDCGPIVMFKNRKQWPTPPTKGFTETIDALDNTAQLLSEYQLKEKLPGTGLDEPFEAGADVTGGGTTVAEEAGGSVAPVALVALVAFCIWVEHTNLMDADPGAGLVLLHTLLG
Ga0255216_1029381Ga0255216_10293811F039171NAVLATWPEGYVYGTLREYYIKRHNSDDATMYEAKFQNAWDTVEDQNNLGKWSGGHTRLTSVWQPRQYRQYNIK
Ga0255216_1030287Ga0255216_10302871F003332TTYVLDGTTQFASVLDGINQVNVRRGRRDQGDQFSAGTMTFTMLDTDGIFMPFDEDSPYYDTAEAKPGLAPMRRVRLSRYSATNVKEYLFVGVIVNFDYNFALGGLDTVTVYCADDFYLLAQTYLDEFNVSEELSSARLTAVLDRPEVDFPLATRDISTGTQTLGGASAFTIPQGTNVLGYCSQINEAEQGRLFMSRDGDLTFQPRIGTTLDPSVADFSELGADIPYNGLGITFEADQVTNRAVVQILGSNNPQVADDTGSQATYFIQTYSI
Ga0255216_1032678Ga0255216_10326782F091973MRSLVDPTWLLVIALTMVFFANFKNNRIDRAVKLVGRVSLIMLVFLSTGVATFIFDKALATESSPKSEWSPEFIFVLGGGYELGANEAQDFLGTESIRRVNAAATIWQQY
Ga0255216_1035227Ga0255216_10352271F057897VVCFECWQHRLAAMRHCSERVAAGVKRVAHDRARDHLMAWVEAAKESKRSRGVARRVVARLLNQRVSVCFHSWVDAVGCARQERTAAAQRAAEQDARKLLLEQCRKGIVLHLMRVCMIRRHRLLMQDAVESWKHAVSQTRDGAAVCRRVLGRLLHRSVGAAFEGWREHGAEQKRQRAVVMRVAARLRNRWVVVCFECWQHRLAAMRHCSERVAAGVKRVAHDMARDHLMAWVEAAKESKRSRGVARR
Ga0255216_1036905Ga0255216_10369051F018538MKSLKDLKNLLEQEKDFSKFDALVRAGLGNKAQIRKLHDILNKMS
Ga0255216_1036979Ga0255216_10369791F023838MPTSPRLLALWLLVSASATCLPVTTSHGATIDLDRLIRCIEAREGARWASPGGALQFTRATWSEFSSDPYLRASQPDKARQIARKALFLTIQRMERDGIKPTVWLLALRWNCGYEGMRRRMREPWSYAEHV
Ga0255216_1036979Ga0255216_10369792F042314ITNMTHTQSGQELKDAGCALILEHTPERWVADFEQQAAALLKANGSFTAEEVVTLIGQPPNHTNAIGAVCRTFVKRNGLTGSYEPAKSPTAHGRIITRWSMTTF
Ga0255216_1040322Ga0255216_10403222F046254GLSAPKMAQRLRDLGGEPLPVFLKGRTTRVWRIPCFPKQEAPFETPVAKQASPF
Ga0255216_1042741Ga0255216_10427412F097250MSITVRSALSLATQQINVVMTRFLSYFQIWTPTLSLKERQRLLRKAARRVKEQPKTQRVVMPSKLITDPTFGYVNSALTNVQDTWKKHSTGVKNAGLFNNSNADRTNDKESGAEMSPQKIRRVQ
Ga0255216_1047038Ga0255216_10470382F071157MSYKISDSVAMRFIQIFQEAVLLGIDGADLMRQVRLVVDETTPDTVTLCPAYEKQVAEMHQKYLEEAELLKTSSTDVF
Ga0255216_1047587Ga0255216_10475871F047509LGLPADEVESLRAFAIAHGLTMAEWVSRWAQSLKAANGSRLSAIHPEVIAITGLVPREWTEVETDYQRHLLAKHQ
Ga0255216_1048302Ga0255216_10483021F023835SHLRICVPKFATGVNYSRVMAFNKPRTLQGEIAALEREVDQHRRDMAEIEGNDGVAHGNVSDWLITSGRTLIDKGDELLSLLTLDPDFGKHRDAFMRELKTFRKFYKKWSEKNSD
Ga0255216_1048649Ga0255216_10486492F088766MIFVTPKKLYYVLLYKPRTFPDGGWSNFIATPYLGKARYYAKKLKRPHRQIDVRVRGKRKAYVLKGSWL
Ga0255216_1053075Ga0255216_10530751F061856KMDATFNLTRTKVKTMNQHQNQVSRAMIHINDVKYDLLKIAELYDGVLQEGLGHMPADMFNAYLSDLRGEDWVHDFEVSEITLKEQSYTYDISVQITKDRTPKKLKIHVGLYKSPWPELAVSKMKYTGNGYVTK
Ga0255216_1055277Ga0255216_10552771F018920LMINTFYVYENITADKFILEMLKLGKPIETSLVGVFDSEGRGSRRDVDLPFHRDGDYSKDIAAKHSIDYVGLYCIRSGESKTLLEVDGQEIELTLKEGQAIIMNNRNIRHARKGAVGDRLLLRIWIEE
Ga0255216_1057526Ga0255216_10575262F091973MRSLIDPVWFLLLVLTFTIFAKVESTRVNRVIKLLTRVSISMLLFLSTGVATLIFDQILATETSPNSDWSPKFIFVLGGGYELGANNAQDFLGTESIRRVNAAQAL
Ga0255216_1058859Ga0255216_10588591F068611MSAKFDIPGRVFDFQKDLAYGQNGEMLIDGFMEALSGGSVEVKNDRYRNGTMVVETDQNPKGIKDEQGNPIWVKSGINITTAKWWVYIFSPEGGFVVVSTSRLKRFLRANPEKYNKNTKTNLGGPDN
Ga0255216_1061122Ga0255216_10611222F011385MNEITVWFFAGWIVGILFGYVVWAPETRFKRNFVDGLTLHFLWGKR
Ga0255216_1061680Ga0255216_10616801F037068EAVRSEVEAVQAQSAKQAETVSGLLVKVADIEGVKPAVQADMEQLKRQMAEEALGVAGRVESLQAAIEQSGKDQEGLLLASLMKLQEEVDGKIGAVKGEVDVQGKSVIEVLETLAAERKAADDDRKHVQTRLEAVRSEVEAVQAQSAKQAETVSGLLVKVADIEGMKPAV
Ga0255216_1062138Ga0255216_10621381F020340VLDANLLGSKGLFLSSGARTFADLGLQGDAGTHFRLRFSYNSLTVESNEFNVKPNHMHVSVHPSDGQYSAGASKADIGAGITVQARDGGNNVLTGADNTNAGSDTVVVTVLEASGSVLDANLLGSKGLFLSSGARTFADLGLQGDAGTHFRLRFSYNSVEVDSNEFNVKP
Ga0255216_1062273Ga0255216_10622732F003768MAHFAKIDNGIVSQVIVVSNDDAPTEAAGKAFIASIGLAGEWVQTSYNNNPVEGQDRGKYAGIGDVWNGSQFVSPVSEVVE
Ga0255216_1063943Ga0255216_10639431F041164MAQKRILIGTPLKGDIPKSYFRTSLQMVTAEIPDVKLDWILLDGPAVQIARNEIAHYAVEQKFDELIFWDKDVLAQRNGEDVTASALMRLISHDRDIVTAVYSSRSLNTHWHVHPIKGEEPDETGLQR

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