Basic Information | |
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IMG/M Taxon OID | 3300028071 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133460 | Gp0293409 | Ga0255216 |
Sample Name | Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Atlam_RepA_8d |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 132265979 |
Sequencing Scaffolds | 37 |
Novel Protein Genes | 40 |
Associated Families | 38 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria | 2 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 8 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp. | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales | 1 |
All Organisms → Viruses → Predicted Viral | 4 |
Not Available | 18 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 1 |
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED240 | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69 | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | freshwater river biome → river → river water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
Location Information | ||||||||
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Location | USA: Louisiana | |||||||
Coordinates | Lat. (o) | 29.8571 | Long. (o) | -89.9778 | Alt. (m) | N/A | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003332 | Metagenome | 493 | Y |
F003768 | Metagenome | 469 | Y |
F006843 | Metagenome | 363 | Y |
F011385 | Metagenome / Metatranscriptome | 291 | Y |
F016270 | Metagenome / Metatranscriptome | 248 | N |
F018538 | Metagenome / Metatranscriptome | 234 | Y |
F018920 | Metagenome | 232 | Y |
F020340 | Metagenome / Metatranscriptome | 224 | Y |
F023494 | Metagenome / Metatranscriptome | 210 | Y |
F023835 | Metagenome / Metatranscriptome | 208 | N |
F023838 | Metagenome | 208 | N |
F037068 | Metagenome / Metatranscriptome | 168 | N |
F039171 | Metagenome / Metatranscriptome | 164 | Y |
F041091 | Metagenome | 160 | N |
F041164 | Metagenome / Metatranscriptome | 160 | N |
F042314 | Metagenome | 158 | N |
F043698 | Metagenome / Metatranscriptome | 156 | Y |
F046203 | Metagenome / Metatranscriptome | 151 | Y |
F046254 | Metagenome | 151 | Y |
F046365 | Metagenome / Metatranscriptome | 151 | Y |
F047509 | Metagenome / Metatranscriptome | 149 | N |
F048971 | Metagenome | 147 | Y |
F051091 | Metagenome | 144 | N |
F051795 | Metagenome | 143 | Y |
F053140 | Metagenome | 141 | Y |
F057897 | Metagenome / Metatranscriptome | 135 | N |
F061856 | Metagenome / Metatranscriptome | 131 | Y |
F068611 | Metagenome | 124 | Y |
F071157 | Metagenome / Metatranscriptome | 122 | Y |
F074787 | Metagenome / Metatranscriptome | 119 | Y |
F077243 | Metagenome / Metatranscriptome | 117 | N |
F078620 | Metagenome / Metatranscriptome | 116 | N |
F079805 | Metagenome / Metatranscriptome | 115 | Y |
F086641 | Metagenome / Metatranscriptome | 110 | N |
F088766 | Metagenome / Metatranscriptome | 109 | Y |
F089854 | Metagenome / Metatranscriptome | 108 | N |
F091973 | Metagenome / Metatranscriptome | 107 | Y |
F097250 | Metagenome / Metatranscriptome | 104 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0255216_1005355 | All Organisms → cellular organisms → Bacteria | 2545 | Open in IMG/M |
Ga0255216_1006149 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 2335 | Open in IMG/M |
Ga0255216_1006315 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp. | 2296 | Open in IMG/M |
Ga0255216_1006411 | All Organisms → cellular organisms → Bacteria | 2273 | Open in IMG/M |
Ga0255216_1009207 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Candidatus Nanopelagicales | 1804 | Open in IMG/M |
Ga0255216_1009213 | All Organisms → Viruses → Predicted Viral | 1804 | Open in IMG/M |
Ga0255216_1013689 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1395 | Open in IMG/M |
Ga0255216_1013928 | All Organisms → Viruses → Predicted Viral | 1378 | Open in IMG/M |
Ga0255216_1014515 | Not Available | 1340 | Open in IMG/M |
Ga0255216_1015940 | Not Available | 1258 | Open in IMG/M |
Ga0255216_1017416 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1187 | Open in IMG/M |
Ga0255216_1020867 | All Organisms → Viruses → Predicted Viral | 1054 | Open in IMG/M |
Ga0255216_1021415 | All Organisms → Viruses → Predicted Viral | 1035 | Open in IMG/M |
Ga0255216_1022535 | Not Available | 1001 | Open in IMG/M |
Ga0255216_1023555 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 972 | Open in IMG/M |
Ga0255216_1024760 | Not Available | 939 | Open in IMG/M |
Ga0255216_1026072 | Not Available | 907 | Open in IMG/M |
Ga0255216_1029381 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 837 | Open in IMG/M |
Ga0255216_1030287 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 820 | Open in IMG/M |
Ga0255216_1032678 | Not Available | 780 | Open in IMG/M |
Ga0255216_1035227 | Not Available | 743 | Open in IMG/M |
Ga0255216_1036979 | Not Available | 720 | Open in IMG/M |
Ga0255216_1040322 | Not Available | 680 | Open in IMG/M |
Ga0255216_1042741 | Not Available | 654 | Open in IMG/M |
Ga0255216_1047038 | Not Available | 614 | Open in IMG/M |
Ga0255216_1047587 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 609 | Open in IMG/M |
Ga0255216_1048302 | Not Available | 603 | Open in IMG/M |
Ga0255216_1048649 | Not Available | 600 | Open in IMG/M |
Ga0255216_1053075 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED240 | 566 | Open in IMG/M |
Ga0255216_1055277 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69 | 551 | Open in IMG/M |
Ga0255216_1057526 | Not Available | 537 | Open in IMG/M |
Ga0255216_1058859 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 529 | Open in IMG/M |
Ga0255216_1061122 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 517 | Open in IMG/M |
Ga0255216_1061680 | Not Available | 514 | Open in IMG/M |
Ga0255216_1062138 | Not Available | 511 | Open in IMG/M |
Ga0255216_1062273 | Not Available | 511 | Open in IMG/M |
Ga0255216_1063943 | Not Available | 502 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0255216_1005355 | Ga0255216_10053556 | F086641 | MTVDFKPATFRGFRNVAETRTYPLSEGYTDTDVSRGGHRYWLAPGGVKKVGQEVLGDRVVGTVVTGTVRLTLEHDDVPTFHLDLKTHTVSLGDRVQEAAR |
Ga0255216_1006149 | Ga0255216_10061492 | F003332 | MAGVAVVASGNYDLEIDTGFVQDAFLLDDATAGLLNNTQYVLDGTTQFASVLDGVNQVNVRRGRRDQGDQFSAGTMTFTMLDTDGIFMPFDEDSPYYDTAEAKPGLAPMRQVRLSRYSATNVKEYLFKGVIVNFNYNFALGGLDTVTVYCADDFYLLAQTYIDGFNPVEQLSSARLTAILDRPEVDYPAATRNISTGTQTLGGSSAFTIPQSTNVLGYCSQINEAEQGRLFISRDGDLTFQPRVGTTLDPSVADFSELGADIPYNGLGITFEADGVTNRAVVQILGNTTAQVADDTGSQ |
Ga0255216_1006315 | Ga0255216_10063151 | F051795 | MIRLTPSQITVDAAAAEGLPSRSISGVAVTYDETAVVNDGTKVRFL |
Ga0255216_1006411 | Ga0255216_10064113 | F089854 | MLKKLLMAGWVALAGATGLLAQTKTDSFSEIIGENTQSLLGITRLIVVGIPGITEMSIDNPRTDPATGKLSEGTGFIRWNKWGALRVEDVEVKDGKLELKVVGMLPTRNFIQRKGSADAIEVRFIMSIGSGGVEQSGFNVTVPEAQVPGGAISVKDIFVTYNPPEIAMGALFQIGDGRGIGASFALSDGNLNGLSLRGTDLNWRLGASGSRIDKLDVGFGNIQNPPWYIDGGFTVIVGETRVAGRWPLEVEARGRFYSDYRVDIRGSAMIAGIP |
Ga0255216_1009207 | Ga0255216_10092071 | F023494 | MKGKAALNRAFVSFPQLNRLVTTTNFIDKKTHMGELLFATSFQLNQLSKLKTKELG |
Ga0255216_1009213 | Ga0255216_10092135 | F006843 | VTGFNLDNYVDVPTRLGMALTKYPDLRIQETQREIIEMPDKSCFIRCTVTVWRDANDP |
Ga0255216_1013689 | Ga0255216_10136892 | F077243 | MNLHEAAALSAAKDVIEQAQTTSALEQRALAIVNLSIELHKKAIDLRLQAEEILKEIRFQ |
Ga0255216_1013928 | Ga0255216_10139284 | F074787 | MPASTTIEVVGVKQTINSLRKIDPQLQKDFKADATQIAQPAIQ |
Ga0255216_1014515 | Ga0255216_10145151 | F048971 | NGESLERHNWGNNPIKLKHIPKNINLPSFEEDLLNSLNLEDNEKSIVELLWGDIQLGKRVQACIIMWISVHILKRPVLYIFRNLTIDQKQLQDDIVGTENYNFNIQFIKSLFQEFNSELQEYFDENNVEYWKDYKLPELKDINSNDIINKLSNKEAINSNDIFCCLMNHTQLAKINTKFSEYIYYNDELVNITTLVDESDLMSPTSSNDRSNDNDKKDSTACEILLAKIYKKVKYALHITGTAHSLLYNITTRLSDHTDIQIKISKVHKMKRSNDYFGLFNNSISFNTTLVEAWWDYQDKENHKKKTCYDIVEDYNINIKKIIEKILERPIIKYNSLLISEEKIRTNQFCLVDKIINDFPNLFIVIYHGNCLRLYFSKKYEKEVKYWSKWDSKQSSTSQRLWQSGGIYGSSIDTEKSEKLPNNYCYFNINTKILNIKLVYKLLRIL |
Ga0255216_1015940 | Ga0255216_10159401 | F043698 | MADVLKPLPAIVTDTYANKAPRISDQSKPRKLNLDVVDPSPTSNGDTVDPKTLQVRRTFKDAAQAHSAYRRLKQQNVERNRKNQLIQKKLNNEPPYSAKKLESMGQNWRSNRPTGFLSTMVSRIQPPFKQVIEQAPTLTYTKYPVEGVDSENKTKIFREEITKCIRGWKGHDDIVAQVVHENTTF |
Ga0255216_1017416 | Ga0255216_10174161 | F016270 | MDLSYRWLNQKKLGKQDGRKASLAFIVKCLENADHLGIQLVIDYQLQRSWKCDRGTWQPLPSVEQGDWYHIEIDPHVANDAMIAKQRWITVFGVFPTSP |
Ga0255216_1020867 | Ga0255216_10208673 | F041091 | MSEWKTQQQVYDELRNDILEEVAVEIEKMKCFGNDTLSSFAIFIRG |
Ga0255216_1021415 | Ga0255216_10214151 | F051091 | SRNEVEAAQSRQPTGRLAPVVPMHDVEVPFPDEPQREYATPKQMGMMRALANGQGLKGDDLKTFISATLNREVQTSGELTKRDISKVIDALKASEPK |
Ga0255216_1022535 | Ga0255216_10225352 | F053140 | QLVTRAYDTDNLNHFQRRIYLDVATNRPKFSAAAFTEGASEESTLLTDQTYSRSETWKFADSAYDLTNANNDYNRAYRKDYSTGPDSVQPGTGFEPEMVQEFRLPLITRRQGRLSWIEVTNTQGFISVMSLGYETRAGQRANLVQV |
Ga0255216_1023555 | Ga0255216_10235551 | F079805 | MPASTTIEVVGVKQTINSLRKIDPQLQKDFKADATAIAQPAINAGKAVYKDLPLSGMRYAWTQNARKIFPFVPSKAANGVKMRFDTRRNA |
Ga0255216_1023555 | Ga0255216_10235553 | F046365 | GLQSNSATLTLYASYASSESYALLSVLVGTKCYIKVTPASGANTATNPGFELTNTFLSALPVVNANLGELSTYDIELVGGSYTVDVT |
Ga0255216_1024760 | Ga0255216_10247603 | F046203 | MAGQKNWDVDQDTTFTFVVEYKDPDDAIIDLTGATAKMQVRDATGQKLAFTLTSPSGGITIDGALGKVT |
Ga0255216_1026072 | Ga0255216_10260722 | F078620 | PHDETFMYHGVDCGPIVMFKNRKQWPTPPTKGFTETIDALDNTAQLLSEYQLKEKLPGTGLDEPFEAGADVTGGGTTVAEEAGGSVAPVALVALVAFCIWVEHTNLMDADPGAGLVLLHTLLG |
Ga0255216_1029381 | Ga0255216_10293811 | F039171 | NAVLATWPEGYVYGTLREYYIKRHNSDDATMYEAKFQNAWDTVEDQNNLGKWSGGHTRLTSVWQPRQYRQYNIK |
Ga0255216_1030287 | Ga0255216_10302871 | F003332 | TTYVLDGTTQFASVLDGINQVNVRRGRRDQGDQFSAGTMTFTMLDTDGIFMPFDEDSPYYDTAEAKPGLAPMRRVRLSRYSATNVKEYLFVGVIVNFDYNFALGGLDTVTVYCADDFYLLAQTYLDEFNVSEELSSARLTAVLDRPEVDFPLATRDISTGTQTLGGASAFTIPQGTNVLGYCSQINEAEQGRLFMSRDGDLTFQPRIGTTLDPSVADFSELGADIPYNGLGITFEADQVTNRAVVQILGSNNPQVADDTGSQATYFIQTYSI |
Ga0255216_1032678 | Ga0255216_10326782 | F091973 | MRSLVDPTWLLVIALTMVFFANFKNNRIDRAVKLVGRVSLIMLVFLSTGVATFIFDKALATESSPKSEWSPEFIFVLGGGYELGANEAQDFLGTESIRRVNAAATIWQQY |
Ga0255216_1035227 | Ga0255216_10352271 | F057897 | VVCFECWQHRLAAMRHCSERVAAGVKRVAHDRARDHLMAWVEAAKESKRSRGVARRVVARLLNQRVSVCFHSWVDAVGCARQERTAAAQRAAEQDARKLLLEQCRKGIVLHLMRVCMIRRHRLLMQDAVESWKHAVSQTRDGAAVCRRVLGRLLHRSVGAAFEGWREHGAEQKRQRAVVMRVAARLRNRWVVVCFECWQHRLAAMRHCSERVAAGVKRVAHDMARDHLMAWVEAAKESKRSRGVARR |
Ga0255216_1036905 | Ga0255216_10369051 | F018538 | MKSLKDLKNLLEQEKDFSKFDALVRAGLGNKAQIRKLHDILNKMS |
Ga0255216_1036979 | Ga0255216_10369791 | F023838 | MPTSPRLLALWLLVSASATCLPVTTSHGATIDLDRLIRCIEAREGARWASPGGALQFTRATWSEFSSDPYLRASQPDKARQIARKALFLTIQRMERDGIKPTVWLLALRWNCGYEGMRRRMREPWSYAEHV |
Ga0255216_1036979 | Ga0255216_10369792 | F042314 | ITNMTHTQSGQELKDAGCALILEHTPERWVADFEQQAAALLKANGSFTAEEVVTLIGQPPNHTNAIGAVCRTFVKRNGLTGSYEPAKSPTAHGRIITRWSMTTF |
Ga0255216_1040322 | Ga0255216_10403222 | F046254 | GLSAPKMAQRLRDLGGEPLPVFLKGRTTRVWRIPCFPKQEAPFETPVAKQASPF |
Ga0255216_1042741 | Ga0255216_10427412 | F097250 | MSITVRSALSLATQQINVVMTRFLSYFQIWTPTLSLKERQRLLRKAARRVKEQPKTQRVVMPSKLITDPTFGYVNSALTNVQDTWKKHSTGVKNAGLFNNSNADRTNDKESGAEMSPQKIRRVQ |
Ga0255216_1047038 | Ga0255216_10470382 | F071157 | MSYKISDSVAMRFIQIFQEAVLLGIDGADLMRQVRLVVDETTPDTVTLCPAYEKQVAEMHQKYLEEAELLKTSSTDVF |
Ga0255216_1047587 | Ga0255216_10475871 | F047509 | LGLPADEVESLRAFAIAHGLTMAEWVSRWAQSLKAANGSRLSAIHPEVIAITGLVPREWTEVETDYQRHLLAKHQ |
Ga0255216_1048302 | Ga0255216_10483021 | F023835 | SHLRICVPKFATGVNYSRVMAFNKPRTLQGEIAALEREVDQHRRDMAEIEGNDGVAHGNVSDWLITSGRTLIDKGDELLSLLTLDPDFGKHRDAFMRELKTFRKFYKKWSEKNSD |
Ga0255216_1048649 | Ga0255216_10486492 | F088766 | MIFVTPKKLYYVLLYKPRTFPDGGWSNFIATPYLGKARYYAKKLKRPHRQIDVRVRGKRKAYVLKGSWL |
Ga0255216_1053075 | Ga0255216_10530751 | F061856 | KMDATFNLTRTKVKTMNQHQNQVSRAMIHINDVKYDLLKIAELYDGVLQEGLGHMPADMFNAYLSDLRGEDWVHDFEVSEITLKEQSYTYDISVQITKDRTPKKLKIHVGLYKSPWPELAVSKMKYTGNGYVTK |
Ga0255216_1055277 | Ga0255216_10552771 | F018920 | LMINTFYVYENITADKFILEMLKLGKPIETSLVGVFDSEGRGSRRDVDLPFHRDGDYSKDIAAKHSIDYVGLYCIRSGESKTLLEVDGQEIELTLKEGQAIIMNNRNIRHARKGAVGDRLLLRIWIEE |
Ga0255216_1057526 | Ga0255216_10575262 | F091973 | MRSLIDPVWFLLLVLTFTIFAKVESTRVNRVIKLLTRVSISMLLFLSTGVATLIFDQILATETSPNSDWSPKFIFVLGGGYELGANNAQDFLGTESIRRVNAAQAL |
Ga0255216_1058859 | Ga0255216_10588591 | F068611 | MSAKFDIPGRVFDFQKDLAYGQNGEMLIDGFMEALSGGSVEVKNDRYRNGTMVVETDQNPKGIKDEQGNPIWVKSGINITTAKWWVYIFSPEGGFVVVSTSRLKRFLRANPEKYNKNTKTNLGGPDN |
Ga0255216_1061122 | Ga0255216_10611222 | F011385 | MNEITVWFFAGWIVGILFGYVVWAPETRFKRNFVDGLTLHFLWGKR |
Ga0255216_1061680 | Ga0255216_10616801 | F037068 | EAVRSEVEAVQAQSAKQAETVSGLLVKVADIEGVKPAVQADMEQLKRQMAEEALGVAGRVESLQAAIEQSGKDQEGLLLASLMKLQEEVDGKIGAVKGEVDVQGKSVIEVLETLAAERKAADDDRKHVQTRLEAVRSEVEAVQAQSAKQAETVSGLLVKVADIEGMKPAV |
Ga0255216_1062138 | Ga0255216_10621381 | F020340 | VLDANLLGSKGLFLSSGARTFADLGLQGDAGTHFRLRFSYNSLTVESNEFNVKPNHMHVSVHPSDGQYSAGASKADIGAGITVQARDGGNNVLTGADNTNAGSDTVVVTVLEASGSVLDANLLGSKGLFLSSGARTFADLGLQGDAGTHFRLRFSYNSVEVDSNEFNVKP |
Ga0255216_1062273 | Ga0255216_10622732 | F003768 | MAHFAKIDNGIVSQVIVVSNDDAPTEAAGKAFIASIGLAGEWVQTSYNNNPVEGQDRGKYAGIGDVWNGSQFVSPVSEVVE |
Ga0255216_1063943 | Ga0255216_10639431 | F041164 | MAQKRILIGTPLKGDIPKSYFRTSLQMVTAEIPDVKLDWILLDGPAVQIARNEIAHYAVEQKFDELIFWDKDVLAQRNGEDVTASALMRLISHDRDIVTAVYSSRSLNTHWHVHPIKGEEPDETGLQR |
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