3300028035: Plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE5

Overview

Basic Information

• IMG/M Taxon OID: 3300028035
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128948 | Gp0306254 | Ga0265347
• Sample Name: Plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE5
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 21507617
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → unclassified Patescibacteria group → Patescibacteria group bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → valley → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.9989
  • Long. (^o): 10.7903
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000664	Metagenome / Metatranscriptome	950	Y
F007270	Metagenome / Metatranscriptome	354	Y
F013334	Metagenome / Metatranscriptome	272	Y
F016196	Metagenome / Metatranscriptome	249	Y
F017737	Metagenome / Metatranscriptome	239	Y
F047249	Metagenome / Metatranscriptome	150	Y
F073790	Metagenome / Metatranscriptome	120	Y
F089142	Metagenome / Metatranscriptome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0265347_100790	Not Available	839
Ga0265347_102551	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → unclassified Patescibacteria group → Patescibacteria group bacterium	592
Ga0265347_103045	Not Available	565
Ga0265347_103725	Not Available	534
Ga0265347_103882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	528
Ga0265347_104545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	507
Ga0265347_104697	Not Available	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0265347_100790	Ga0265347_1007901	F016196	MSDVYVYHFMRRGRAGENILSRRCATLETINGKGEAVMESQIVVDHTEVDGNGYLVGRNGNESHLTDERWAQIRSLERRANSRDSEALTLNESGEGARSYLLRMESRELRKEAQRLRKQRADSMVGELGNRIDSQVFVEFRGDPTTG
Ga0265347_102551	Ga0265347_1025511	F089142	MNFTTFVRKPFVVDAIEVTSENIAEVAKYVGDLREKEDGTPYILVDRRLVPNVFRVYPGFFMTKMGENVRCYSRKIFKEQFIVQTAEIKPWVEIMGKNDT
Ga0265347_103045	Ga0265347_1030451	F000664	MTGTFKIPQDLLSEAKRTKPKNDRLHVEGWRNSWLSRLAEMLVGKD
Ga0265347_103045	Ga0265347_1030452	F007270	MRLARPVYESLPLIYMLIGAAAIFLFYINPPGFAGKAAFLIGVFAETAALTLFLRRQDCRELSREYSGETIDLPSNLNS
Ga0265347_103725	Ga0265347_1037252	F073790	MARFDTLNSGWMVWDNPAPAPEGAVLEYTRELEKFLADIERR
Ga0265347_103882	Ga0265347_1038821	F013334	MGRNKVKPEQASKVLMRMPTLRSFGEGRTCGEAIDTRTHAIRRGSGHGTSVGWFAVTGGDPSRARVAASTSRKAAAMAGVGRGSMTVEAG
Ga0265347_104545	Ga0265347_1045451	F017737	MNARTITPGKSAPVSPAKATPVSPRFDRKFIEDHKLIERYLENKLPFKGARDLEQWCRSHPDYLNDLKLSERAHLSLKLLEASGQPQDLGEPKAPWWKSIFVLVGLAAVTFICLMAVMSL
Ga0265347_104697	Ga0265347_1046971	F047249	MYPQRGAAQYQSVRNHGLVADASPTRLVQVMFEQILAQLAIAQG