3300028026: Tube worm associated microbial communities from hydrothermal vent at the East Pacific Rise, Pacific Ocean - Tevnia

Overview

Basic Information

• IMG/M Taxon OID: 3300028026
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046784 | Gp0296316 | Ga0256846
• Sample Name: Tube worm associated microbial communities from hydrothermal vent at the East Pacific Rise, Pacific Ocean - Tevnia
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 440506227
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Hydrothermal Vents In The Atlantic And Pacific Ocean
• Type: Host-Associated
• Taxonomy: Host-Associated → Annelida → Integument → Unclassified → Unclassified → Tube Worm Surface → Marine Microbial Communities From Hydrothermal Vents In The Atlantic And Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: Pacific Ocean: East Pacific Rise
• Coordinates
  • Lat. (^o): 9.8441
  • Long. (^o): -104.2969
  • Alt. (m): N/A
  • Depth (m): 2511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023595	Metagenome / Metatranscriptome	209	Y
F025922	Metagenome / Metatranscriptome	199	Y
F029285	Metagenome / Metatranscriptome	189	Y
F036102	Metagenome / Metatranscriptome	170	Y
F103060	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0256846_1000032	Not Available	59515
Ga0256846_1006377	Not Available	2347
Ga0256846_1007736	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	2129
Ga0256846_1015167	All Organisms → cellular organisms → Bacteria	1565
Ga0256846_1036252	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1084
Ga0256846_1036769	Not Available	1078
Ga0256846_1084164	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	775
Ga0256846_1116102	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	679
Ga0256846_1138801	All Organisms → cellular organisms → Bacteria	631
Ga0256846_1147089	Not Available	616

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256846_1000032	Ga0256846_100003237	F029285	MKKLKNKYDYSQYKCPFSYLKKDCGHELHGLEGYEDIYGVWCLCGFCGPVFYLDPEELKLEKII
Ga0256846_1006377	Ga0256846_10063773	F036102	MDLKEMQALFAETANIHTPEGMAAYRAFAAALTTPILQKIEMESIMRQLFAVERLAPGAQAVYPVAEDFEIPVWVLPGLG
Ga0256846_1007736	Ga0256846_10077361	F103060	LKKYVLSQLGYPAVDVEITEDQFESVLRVTGDFISTYFPREQKLSVFWTQPLVPTYPMPEDAYWIQEVSWDPVTTRIDDVFGAESFLFNIGNISGIQNILTDYHLLQAYRRFSQKILGTEGHWEVLGEGDGGPGDQKIRLYPTPKGSFPVVVLYMPVVNHFRSPQSKYIAHKMLLAEAKMMVGAARRKIAGIPMPDGGALSLDGDAMVAEGKEEKQNIIKEALDLGEPLSIYKW
Ga0256846_1015167	Ga0256846_10151672	F023595	MVDFGSGQGLSDFETAGIAGYVEDFKRAKTQPWAKRCRLWMDTS
Ga0256846_1036252	Ga0256846_10362521	F023595	FGSGQGLSDFETAGIAGYFEDFKRAKTQPWAKRCRLWMGTSYI
Ga0256846_1036769	Ga0256846_10367691	F023595	GSGQGLSDFETAGIAGYSEDFKRAKTPPWAERCRLWMGTNL
Ga0256846_1084164	Ga0256846_10841641	F023595	MVDFGSGQGLSDFETAGIASYFEDFKRAKTQPWAERCRLWMGTI
Ga0256846_1116102	Ga0256846_11161021	F023595	MVDFGSGQGLSDFETAGIAGYSEDFKKAKTQPWAERC
Ga0256846_1138801	Ga0256846_11388011	F023595	VDFGSGQGLSDFETAGIASYFEDFKRAKTQPWAERCRLWMGTS
Ga0256846_1147089	Ga0256846_11470891	F025922	MARNRIIYASQSVWINGEVLYRVQSLGTTTTFTSEDIFELGHLDIVDVVDDVPAVAVTLNTNDFGDVKTLAVLAQVAPAKIDMDASATSVNANLVAGGSTYLHGVALADFAVTCGNLTGVTLWAPVQDECSLGTLANNIDQSLYLDEVYINSLEFSYTTGANATENYG