3300028009: Plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE6

Overview

Basic Information

• IMG/M Taxon OID: 3300028009
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128948 | Gp0306255 | Ga0265348
• Sample Name: Plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE6
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 16420698
• Sequencing Scaffolds: 7
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → unclassified Patescibacteria group → Patescibacteria group bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → valley → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.997
  • Long. (^o): 10.7902
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012826	Metagenome / Metatranscriptome	277	Y
F017942	Metagenome / Metatranscriptome	237	Y
F018655	Metagenome / Metatranscriptome	233	Y
F054442	Metagenome / Metatranscriptome	140	N
F071529	Metagenome / Metatranscriptome	122	Y
F085929	Metagenome / Metatranscriptome	111	Y
F089142	Metagenome / Metatranscriptome	109	Y
F103337	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0265348_100016	Not Available	3574
Ga0265348_100269	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → unclassified Patescibacteria group → Patescibacteria group bacterium	1164
Ga0265348_100355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium	1011
Ga0265348_100875	Not Available	704
Ga0265348_101784	Not Available	546
Ga0265348_101960	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532
Ga0265348_102284	Not Available	511

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0265348_100016	Ga0265348_1000166	F089142	MNFTTFVRKPFVVDAIEVTSENIAEVAKYVGDLREKEDGTPYILVDRRLVPNVFRVYPGFFMTKMGENVRCYSRKIFKEQFIVQTAEIKPWVEIMGKNDTAA
Ga0265348_100269	Ga0265348_1002693	F103337	MSSKIVVHKDRTNILTVSLGIDVSADIITSEIRSEPDVEAPLIATWAVSFKTDGTDGELILRLDDIDTAQIKANSGYMDLKRVVGDEPFAVFDQAVEVVFRGSVTL
Ga0265348_100355	Ga0265348_1003551	F054442	MEFAEQLLRGGDFVGLFRDIDVCQDETGFDVEGVQHLGRLAVGEIVEASSECLAIDRDDTSRRIGNGAAQTSGVLAENLLDRLGIKALEDVSNRGMGWGAPPVQTEGGVQPAAVHFDEGHYGTIGIAAGDDSKDREQQDMLQL
Ga0265348_100875	Ga0265348_1008753	F017942	VVDSIYIVLNSFYRVVDSLFMVVDSQYRVVDSIYIVVDYLYRVVDSLCRVMDSLYRVVDSLYRVVDSLYRVVVSLYRVVDPLYRVVDSLYIVVDYLYRVFDSFYRIVDSLHRVVDSFYRVVDSLCRVLDSLYIVVDGLPL
Ga0265348_101784	Ga0265348_1017842	F012826	ILSIVFSGWVIVANHIPSLDRFALARNLTAVILLGMVAFIPILRFWRMPGNLLASSLVAWVLFSLAYRVLCMDFSGLAERFSAVQVFMLGAVLYMLVVSLCWIWTIVRRARASHVSHPNHHPS
Ga0265348_101960	Ga0265348_1019601	F071529	WLTWMATAHPLATTIVVVALVALSIFLLFHLFRFARRALQKLFAI
Ga0265348_101962	Ga0265348_1019622	F018655	VVDSIYIVLDSLFKVVDSQYRVVDSIYIVMDYLYRVVDSLYRVVDSLYRVVDSPYMVVDYLFGVFDSLYRVVNSLYIMVDYLYRVFDSLYRVVDSSYRVVDSF
Ga0265348_102284	Ga0265348_1022841	F085929	GWLDKTLIITTRDRDDDLPPFEERYSVSQDGQRLVEEVAFKSGRSAGFVMSRVWDKVPQ
Ga0265348_102431	Ga0265348_1024311	F018655	VDSLYRVLDFLYRVVDSLYRVMDSLYRVVDSLYRVVDSLYRVVDSLYGVVDSLYRVVNSLYIVVDYLYRVFDSLYRVVDSLYRVVDSF