3300028001: Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-1-E_N

Overview

Basic Information

• IMG/M Taxon OID: 3300028001
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133410 | Gp0290873 | Ga0247703
• Sample Name: Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-1-E_N
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 19383662
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → unclassified Frankiales → Frankiales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Hillslopes Of Landscape Evolution Observatory, University Of Arizona, Oracle, Az, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → hill → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Arizona
• Coordinates
  • Lat. (^o): 32.5788
  • Long. (^o): -110.8509
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013996	Metagenome / Metatranscriptome	266	Y
F048859	Metagenome / Metatranscriptome	147	Y
F067309	Metagenome	125	Y
F076881	Metagenome / Metatranscriptome	117	Y
F104557	Metagenome / Metatranscriptome	100	Y
F104558	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0247703_100028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4251
Ga0247703_100573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1972
Ga0247703_101362	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1380
Ga0247703_102525	All Organisms → cellular organisms → Bacteria	982
Ga0247703_103129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → unclassified Frankiales → Frankiales bacterium	874
Ga0247703_103388	All Organisms → cellular organisms → Bacteria → Terrabacteria group	839
Ga0247703_103670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	802
Ga0247703_106389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	590

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247703_100028	Ga0247703_1000284	F048859	VAEDPIPFSELLAGYGTTTIGDDMAIESVFALLKVRAEDGSAAWSVRSGGAPLSLEELLGVVDGLTTSIRERLTRAWKRTETPAATTGAQSRPVPIPFSELLAGLQTVGVGDGYLIESVSAVIKARRDDGVPVWHVRSSEMKLSSEELLGALEGYAATVRQDLSGSWKW
Ga0247703_100573	Ga0247703_1005731	F048859	MAHASAPWLHIHGTRRVPSSAVAEEPVPFSELLAGYGTTTIGEDMAIESVFALLKVRAEDGSAAWSVRSGGAPLSLEELLGVVDGLTTSIRERLTRAWKRTETPAAATTGAQSRPVPIPFSELLAGLQTVGVGDGYLIESVSAVIKARRDDGVPVWHVRSSEMKLSSEELLGALEGYAATVRQDLSSSWKW
Ga0247703_101362	Ga0247703_1013623	F076881	MASSKAVSRKVYRCPECYARVVGEPDDDAKTTLWLHGLSGRCRAKQTPKTEKPRRKERLEAMLGEEWG
Ga0247703_102525	Ga0247703_1025252	F104557	MVDVAPHLQDHAVGLEMEIVELARQADQAAQEGWPDREAELRRELNALYTELATVAERLTEEVTAAAPAPSVDAPPAGR
Ga0247703_103129	Ga0247703_1031292	F104558	VHALSTWADEHEFAAADARRRTSAEVDFGATWRQAGSNDAWRLSWIRDTAELYVCRADGYDGSCTDVSVLAVIEREADVDRLLEGWRDLRFDPDGLSWLDQRLAPSLAA
Ga0247703_103388	Ga0247703_1033882	F013996	VSTELLIILSIIEPALLVVILTIALTRVRQRLTTISDGLGELGGMLATVEAQHLRPLRKLVDDINGPLNTINATLPGIAKKAALVVRMSRGR
Ga0247703_103670	Ga0247703_1036701	F104557	MVDVAPHLQDHAVGLEMEIVELARQADQAAQEGWPDREAELRRELNALYSELANVAERLTQEVTAAAPAPAVDAPPASAAY
Ga0247703_106389	Ga0247703_1063892	F067309	MSHIIGRPDDDLLDIMLGGQGADPEQAIIADEEQGAGSEDHLPGDEPTVAER