3300027473: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK08-D (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300027473
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0091533 | Ga0207508
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK08-D (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 21528187
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	3
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000549	Metagenome / Metatranscriptome	1036	Y
F013370	Metagenome	272	Y
F061114	Metagenome / Metatranscriptome	132	Y
F068069	Metagenome / Metatranscriptome	125	Y
F075147	Metagenome / Metatranscriptome	119	Y
F083123	Metagenome / Metatranscriptome	113	Y
F095080	Metagenome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207508_100710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	706
Ga0207508_101474	All Organisms → cellular organisms → Bacteria → Acidobacteria	595
Ga0207508_101525	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	590
Ga0207508_101778	All Organisms → cellular organisms → Bacteria → Acidobacteria	568
Ga0207508_101826	All Organisms → cellular organisms → Bacteria → Acidobacteria	564
Ga0207508_102713	All Organisms → cellular organisms → Bacteria	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207508_100710	Ga0207508_1007102	F013370	LSTGSLCASISGSNCNFASWNPDFDMLMIVANGNGGQIDPGNSIQIDNNFSYQGGLYGTNAVEFGNNVNVDGPIVGSQIILSNNLTTNAFPNISIVPVGMPSNEEVYAQPNPPQGFTG
Ga0207508_101474	Ga0207508_1014742	F083123	KQLVLEDATRKETVATLDAKVDDHGELLSMPTVLFLDRGGYNFASGDVLKISATYDNTTGKSLRDGAMGIVVGYFVPTDDSVMAALRRKPAAHKMAGMSHDQ
Ga0207508_101525	Ga0207508_1015251	F000549	SQFKAERSRHRAEARSSMVFGVPLFLRTLLRLVFVCRHRHKGPPITLREAIPSNLLGYQAVYGRGTYVTCLDCGQKFAYNHKTSRLVDFWGVHDAEALAGVRRRVIEFFSSLRGLAARLGRLKVRTPISEHVRSVPRLGILTKGQ
Ga0207508_101778	Ga0207508_1017781	F075147	VKGGTGTMIMRSGEQWHCTNSVCHCRVVVQLNSHIEGGNPRCVCGAPMKKQYAPPNLTYLEFLRVEDPVPARDGSRKG
Ga0207508_101826	Ga0207508_1018262	F068069	TNNVNLSAMTPPPPHSGRPRYKVVFGKDAQDLEAKLNDPVFTPAGYAVTHLAFNSARAEYLLILEDERNNQS
Ga0207508_101875	Ga0207508_1018752	F095080	MCVAMAATKITVVASAPTTDLQLVLSPVRSFARLVEVERRIQSLPTVRSLYVRDFRGGIATLTVALRSPMTTEEFASGLRVIDEPQLRLVSGTRNVLEFRIEGEASIA
Ga0207508_102713	Ga0207508_1027131	F061114	MNPRLRWRKFVSNFMLTMTCCCALIAVSVLFFILGNL