| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300027464 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0091525 | Ga0207447 |
| Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-D (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 32461934 |
| Sequencing Scaffolds | 37 |
| Novel Protein Genes | 39 |
| Associated Families | 39 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 6 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 8 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 5 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 2 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 5 |
| Not Available | 5 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Wisconsin, United States | |||||||
| Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000146 | Metagenome / Metatranscriptome | 1918 | Y |
| F000268 | Metagenome / Metatranscriptome | 1411 | Y |
| F000569 | Metagenome / Metatranscriptome | 1018 | Y |
| F001262 | Metagenome / Metatranscriptome | 735 | Y |
| F001415 | Metagenome / Metatranscriptome | 699 | Y |
| F001985 | Metagenome / Metatranscriptome | 608 | Y |
| F002103 | Metagenome / Metatranscriptome | 593 | Y |
| F004558 | Metagenome / Metatranscriptome | 433 | Y |
| F005035 | Metagenome / Metatranscriptome | 414 | Y |
| F005895 | Metagenome / Metatranscriptome | 387 | Y |
| F006951 | Metagenome / Metatranscriptome | 361 | Y |
| F008061 | Metagenome / Metatranscriptome | 340 | Y |
| F013555 | Metagenome / Metatranscriptome | 270 | Y |
| F017396 | Metagenome / Metatranscriptome | 241 | Y |
| F017714 | Metagenome / Metatranscriptome | 239 | Y |
| F018099 | Metagenome | 237 | Y |
| F018585 | Metagenome / Metatranscriptome | 234 | Y |
| F024181 | Metagenome | 207 | Y |
| F024911 | Metagenome / Metatranscriptome | 204 | Y |
| F025498 | Metagenome / Metatranscriptome | 201 | Y |
| F025814 | Metagenome | 200 | N |
| F028919 | Metagenome / Metatranscriptome | 190 | N |
| F032645 | Metagenome / Metatranscriptome | 179 | Y |
| F033182 | Metagenome / Metatranscriptome | 178 | Y |
| F035025 | Metagenome / Metatranscriptome | 173 | Y |
| F037486 | Metagenome / Metatranscriptome | 168 | Y |
| F039353 | Metagenome / Metatranscriptome | 164 | Y |
| F040373 | Metagenome / Metatranscriptome | 162 | Y |
| F041046 | Metagenome / Metatranscriptome | 160 | Y |
| F042521 | Metagenome / Metatranscriptome | 158 | Y |
| F043381 | Metagenome / Metatranscriptome | 156 | Y |
| F044672 | Metagenome | 154 | Y |
| F046710 | Metagenome | 151 | Y |
| F051316 | Metagenome | 144 | Y |
| F052286 | Metagenome / Metatranscriptome | 143 | Y |
| F058238 | Metagenome | 135 | N |
| F069283 | Metagenome / Metatranscriptome | 124 | N |
| F072562 | Metagenome / Metatranscriptome | 121 | Y |
| F090808 | Metagenome | 108 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207447_100198 | All Organisms → cellular organisms → Bacteria | 1299 | Open in IMG/M |
| Ga0207447_100401 | All Organisms → cellular organisms → Bacteria | 1062 | Open in IMG/M |
| Ga0207447_100415 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 1048 | Open in IMG/M |
| Ga0207447_100642 | All Organisms → cellular organisms → Bacteria | 937 | Open in IMG/M |
| Ga0207447_100694 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 918 | Open in IMG/M |
| Ga0207447_100888 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 862 | Open in IMG/M |
| Ga0207447_101051 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 825 | Open in IMG/M |
| Ga0207447_101164 | All Organisms → cellular organisms → Bacteria | 802 | Open in IMG/M |
| Ga0207447_101419 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 763 | Open in IMG/M |
| Ga0207447_101470 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 757 | Open in IMG/M |
| Ga0207447_101709 | All Organisms → cellular organisms → Bacteria | 726 | Open in IMG/M |
| Ga0207447_101804 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 717 | Open in IMG/M |
| Ga0207447_101854 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 712 | Open in IMG/M |
| Ga0207447_102041 | All Organisms → cellular organisms → Bacteria | 694 | Open in IMG/M |
| Ga0207447_102069 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 692 | Open in IMG/M |
| Ga0207447_102093 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 690 | Open in IMG/M |
| Ga0207447_102407 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 665 | Open in IMG/M |
| Ga0207447_102574 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 654 | Open in IMG/M |
| Ga0207447_102833 | Not Available | 639 | Open in IMG/M |
| Ga0207447_102910 | Not Available | 634 | Open in IMG/M |
| Ga0207447_102938 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 632 | Open in IMG/M |
| Ga0207447_102954 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 631 | Open in IMG/M |
| Ga0207447_103443 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 603 | Open in IMG/M |
| Ga0207447_103676 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 592 | Open in IMG/M |
| Ga0207447_103703 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 591 | Open in IMG/M |
| Ga0207447_103858 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 584 | Open in IMG/M |
| Ga0207447_104111 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon | 573 | Open in IMG/M |
| Ga0207447_104130 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 573 | Open in IMG/M |
| Ga0207447_104254 | Not Available | 568 | Open in IMG/M |
| Ga0207447_104277 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 568 | Open in IMG/M |
| Ga0207447_104466 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 561 | Open in IMG/M |
| Ga0207447_104646 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii | 555 | Open in IMG/M |
| Ga0207447_104956 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 545 | Open in IMG/M |
| Ga0207447_105140 | Not Available | 539 | Open in IMG/M |
| Ga0207447_105226 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 537 | Open in IMG/M |
| Ga0207447_105273 | All Organisms → cellular organisms → Bacteria → Terrabacteria group | 535 | Open in IMG/M |
| Ga0207447_106604 | Not Available | 502 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207447_100198 | Ga0207447_1001982 | F018585 | MAVPTLRRLVSSRGLPGRGLDLETLAQLHTTLVDERQQLRQDGAPVEELERNRLAIVQCQWELSQALIERYLPPAAAPSAA |
| Ga0207447_100401 | Ga0207447_1004012 | F008061 | VTADRIVLTIPRNEGFENVAQLVLAGVAARLNFTYEVVDDLGTALETLLERRGEEGELTVELEVGEDTVKAALGPFAGDGLRAELEQPDDGVGLRRVLETVVDRFAAVQREDGSWIELEKRVEGIESAK |
| Ga0207447_100415 | Ga0207447_1004152 | F039353 | VSRKISYCDGLHFADAKDSEQPLPPTAVVGFKSAGAAKDRSLAANIDADRALISFKEMPITHVEANHNALKVARGEIGGLAVEAATLINDFEGRQNPPLLDIVEFDGLIWELDRNRGH |
| Ga0207447_100642 | Ga0207447_1006422 | F001262 | MAVGDEIDEIFRREVKSLPAYAKAQGAAGSGVAPPVDEMNQLLMGLVVAAQRSFHLLADRIEDLGSA |
| Ga0207447_100694 | Ga0207447_1006942 | F013555 | VESRGQQLLQDARKLVAESWCHGADARDANGFEVDPWDDDAASWSLLGAVVAVLEREASLSGELPLDELGAALYALADLIETDSLVDWNDDQGQTQAKVVAVLDQAAAAYEDSCAVLELSLN |
| Ga0207447_100888 | Ga0207447_1008882 | F040373 | LRGPRLALGVAGTACLLLLAPLAGASNSSPYADGVADAPAAAPDLTAVDVSNDDAGNVFFRVSIPNRAALAYTDLISLFVDADGKTGTGCAR |
| Ga0207447_101051 | Ga0207447_1010512 | F006951 | MTAGAGPGPGGQGHGSKESGPARGRDFGDFVRLALNTAADQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK |
| Ga0207447_101164 | Ga0207447_1011641 | F000268 | GIAAEAMSYSFVSKASGRLGGPIRFEFYRDSTTSPKTDIKSFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGSSGVTFGFDKNGRMTFPDSFDR |
| Ga0207447_101419 | Ga0207447_1014191 | F035025 | DPAEARNWLIDRLSEIHAGKYVGGIFDQKMVEVMMPSRTERLAVEVMMPSRTERLAFWRDEYALDSFTVLQRLLAFMLSQSQQGPQMRTWLTVSATVLYARPFKQWPEVRLAEDDVPIKYREVHNEVLKYRDKVIAHRDPDAHKRDIWGTELPIVSEGNNIFIPTTNHAMEDDIASSLVELVEILIPMLKARSSSFVSKYLPRPLAPGAYVLSLEENPAEWIKPATPT |
| Ga0207447_101470 | Ga0207447_1014702 | F090808 | VGLLLLASNASAAPRVAVRVVPVFPPKLYAPRGAVGSMVPASGSTVSRATALASLTRGKLENALLGGKPNGKPLISLGGPPAPVTIYVALPPAGKHHNLDRYPIAIVGGGYHGLLLS |
| Ga0207447_101709 | Ga0207447_1017092 | F072562 | MKNRKNYVMTKSNLTLTQSGLLAVLLQRQRYKVIELARRRAHREQARAAFRSTLNWLLAFAHGGIAGRPLRR |
| Ga0207447_101804 | Ga0207447_1018043 | F032645 | QERADTQQERIDAAAKELGEVSDRLQAAARALRQSV |
| Ga0207447_101854 | Ga0207447_1018542 | F051316 | LRARVEAQELELAKLREQLEQERTRKDVHVWPEEQPVPTTPGPVQAEHYLLCVPTAAGYVLLDRVGALPSVGQAVEVPEEEGRFTVTKVVRLPRNGRPCAYLQRA |
| Ga0207447_102039 | Ga0207447_1020391 | F000146 | MALARVVTFDGVSKDRMDEMDREMREGQPPEGFPSSELVVLHDPEAEKSLVIVFFDSEDDYRKGDEILSAMPAADTPGQRTSVTKYNVATRMSS |
| Ga0207447_102041 | Ga0207447_1020412 | F005035 | MNMTATIKRVVTRWTLPALVLIAGGFVCDGLTEVGHHAFLIAGGIALGIEIGRENR |
| Ga0207447_102069 | Ga0207447_1020692 | F017714 | MSDAVEEERCRRRIDPLDELIWHWGMAYRIWAADGTWYARRHDHGEIMQATDPERLSFMIRDDYFGRSGPGADSPPERP |
| Ga0207447_102093 | Ga0207447_1020931 | F024181 | MADARQPTLGISLIAVLAGGAISSWISAAFVDIAPATSVEAWAILTSICGAVGVKVVLRFLKYDVPIAFAAGALMAGRLVSLALVQAMPDLGGHAIPGFPAYGLFSSFPSLVLSAWLVQISAGRIRALMY |
| Ga0207447_102407 | Ga0207447_1024072 | F002103 | MSTDEPFRTDYEFLKGVDYIFVSLDRNLSGEECHELAEKYFETHKAMTLPGQALRVDLRPAFRKPLADVTPKFRAVSIGHTFTPQR |
| Ga0207447_102574 | Ga0207447_1025741 | F004558 | QCARIAQPAASRNRERTSVSLIGSVSGLMGDDLVSSDPPAGMRPRALRGRVSSAGKGARAHALKASDALVEAVGALADRAIDRMLLTGEPVTSAADGKRLLARQADTEAFADDIQRIVVLAVPVVRTLARGARFTKVPWVMVVSSAVSIGVAVRTGVRELQVLSSLVAHRLEQAEGVPSDPALVKKLAIDLYLAPKRTPRLADDRLRLVRLTRKWVF |
| Ga0207447_102833 | Ga0207447_1028331 | F000569 | MDLQIKKVWLPGAAGCLLFFGFHWVLIWLPFDKNRFQFMAIPYLVLPFVGALAAYWSRRMKGSVLERIVSALFPVFAFVALFAVRIVYGLFFEGVPYTLPHFLGGFSVTLVFIVAGGLLLVLGAWPFCRPHLREQLP |
| Ga0207447_102910 | Ga0207447_1029101 | F018099 | MARTYIADIAGGTATVTIQIQATQTLKSATWSGVAAAAGKYELSMASSSQIGTAQPDSNVIARLSLGVLTSGGTFAVQMPINLPVKAFQNVYVHCTGAGNLGTLTLS |
| Ga0207447_102938 | Ga0207447_1029381 | F001415 | VEKDIDMQAVSAAIAGFLACHVLTCRFLAQEGVVDRDRFTAYLETAMAEMAPGIEDQRALFGLRQLIAA |
| Ga0207447_102954 | Ga0207447_1029542 | F043381 | LHIQGGDADVTVQGAGTTSVRVPAGTYRASVVKATITAQGQTVEVTVWIAQGTGPVKTEVVIRAPGGTGLTTNELLSFTKAVSVIGDGS |
| Ga0207447_103443 | Ga0207447_1034431 | F033182 | AAHHRVVSRGAGLPMAHCSPLDEEEHLPATDRLHRLIGPDLTRLLLVALAGDHRMGSRRVAA |
| Ga0207447_103676 | Ga0207447_1036761 | F052286 | MSMPRALLAVTLVLAAVALPAAASSAPVSTSFKIVGYEYAFTSTVGSFAGTGSGDAGGTAYWNATVKHDRLGSDPTYVNGGPFAMAIRGPGRSVDAVVGTFTHHGGKITTLDRGANCTNQKYLVAD |
| Ga0207447_103703 | Ga0207447_1037031 | F041046 | MSAVVTTVIAALSGFAALASVFLYLHFGRRSELATAREEALALAETRRQVIGDLQADFDSLERRHKRMKAEYERRTRELQTALDTTRTQAREEAYRTQHFYAAALSDLLNDLRDDL |
| Ga0207447_103858 | Ga0207447_1038581 | F025498 | MKQKKIETHKIGLVGQAPSRRGDPRKPLAGPNGQKIARLAGMSYDELIACRRRHLNTHNGKSGKADAFDHAKGRVNAADVLLDWRVERIVLLGKNVARCFGFRDLPFLAEIRIYGRRFLIFPHPSGVNR |
| Ga0207447_104111 | Ga0207447_1041111 | F017396 | FNIYLRYTIYKFIMSEYPYEDKIHTDDRVNYKTVYSSDGIKMGKVEAAFSDSFIVKLEKENNIEIKYEIPRLEISSLTDDRIILKLKQGQIDEKYQTSSIKKSSED |
| Ga0207447_104130 | Ga0207447_1041301 | F005895 | EPNWKHRFQGRDASDEYGVTEMGYSPRRLKRLLREAGFVEITRFHNNRKRLFANTPREIAAHIAEPLVYRALGLFWTQTWLRATAP |
| Ga0207447_104254 | Ga0207447_1042542 | F069283 | MTVTAIPPRTTRPRLAPYTAASGDMVLPGCYGISRGQGITGDLIRHAAGPRPGHAFIYIGNGRIVEVAPPAVRIASAASHPDALWNA |
| Ga0207447_104277 | Ga0207447_1042772 | F037486 | MGVTGLWDWIRGIGGKPEEEADLREEFGGEDPGEADERYLSEAGYGAGSGFGGGLSIGDAAQA |
| Ga0207447_104466 | Ga0207447_1044662 | F001985 | PGVKVLAFANSFASTIPPGYLVQGSRDELLQRVESLRDVLRQMSADQLKVNEITEEDRRIQLALYEKLCAYLRTPK |
| Ga0207447_104646 | Ga0207447_1046461 | F028919 | RAGYHVIAYETTTAVFMAADPAILRDLISAMRKDLESQISRQRSEGVTEFGFFGSSLGSFILYNCIGDALPALRWGVFNTGGDIAQGMWRLDGARRQHLLRGWSLPRLEAAWADLQWPQFGRLDGCRFVFVSSRRDTIAPLDDIAPYLGPMRQAGAQVSVLEVRAIGHLTTIVAGLWQAPRIIA |
| Ga0207447_104956 | Ga0207447_1049561 | F042521 | AEREAINRTLDRFVNSAVKRHDVAASWNLVTPEMRAGVSRSAWDKGNLPVIPYPAGGTTFHDWTIDSASATEVDFELMIPSAKSKSDSIQFNGTMRKQQGRWLVDSFNPSATFGGGAVVGPHDFTASSGEGGGKGVARLGSVWIAVPAALIAGGILCVLGFFAYIWLRNRRAYRRANLRP |
| Ga0207447_105140 | Ga0207447_1051401 | F058238 | MTIARKVAIAVVVCAATGMTTQAEAAKRKAAGPTTLEGCPYWVPVCGIVMGSGSNTYVLSGALAPSVPLYTPVRVRGRKTRDNNFCGGTQFEVQAVGRSQKSCVWR |
| Ga0207447_105226 | Ga0207447_1052261 | F046710 | YIFGIGCMLIAARFGNDTLTAAAESSVQPEPPWIEIGPEKAAIARDSKSADGRNALAWTVDSSESIDWSLLEKDPNRFYEQYEVKAIWVINLADKKKVGAIGDTGGYIRPGSHRTLSVAWGPIENGRRFALAAYQWKWGTDTLLLLDVGQGDCRSAQIGPVLDKAIEAQIKRGKSQKR |
| Ga0207447_105273 | Ga0207447_1052732 | F024911 | MLLFVLGSAALAFWVAICRPRLAPANFRSGGIHLAAALVVGIILGPVLHVVPGLPSALSLFVALFAVGLPAITYMLLVGMWL |
| Ga0207447_106604 | Ga0207447_1066042 | F025814 | MRTIRAIPLMALAVAAAGCGGGVSKHYDASEVRGCLVDKNLSMKPADLPGDVSPDGTEGDLAVQVGDNEVDLAFGKDSSEAKSNAQEEMAAARIALGANADDYVRTKGNVAYW |
| Ga0207447_106675 | Ga0207447_1066751 | F044672 | KMVDNDQSFSQQAIADGTALGTPSLRVHDDTGKDFLLARGAYSAAWRHDGAIAFVKGSDPDFRAGRSYTGQVVVRSDIHGRDAAWTSEPAHYVVYAWAGDRLLLYRVGLGEKLELLVAEGPGRIRPLADGSAIAISPDATRVAVLSQDGTSVRVLDIATGSELAWL |
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