NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300027464

3300027464: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-D (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300027464 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0095510 | Gp0091525 | Ga0207447
Sample NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-D (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size32461934
Sequencing Scaffolds37
Novel Protein Genes39
Associated Families39

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria6
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium5
Not Available5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomeagricultural fieldagricultural soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000146Metagenome / Metatranscriptome1918Y
F000268Metagenome / Metatranscriptome1411Y
F000569Metagenome / Metatranscriptome1018Y
F001262Metagenome / Metatranscriptome735Y
F001415Metagenome / Metatranscriptome699Y
F001985Metagenome / Metatranscriptome608Y
F002103Metagenome / Metatranscriptome593Y
F004558Metagenome / Metatranscriptome433Y
F005035Metagenome / Metatranscriptome414Y
F005895Metagenome / Metatranscriptome387Y
F006951Metagenome / Metatranscriptome361Y
F008061Metagenome / Metatranscriptome340Y
F013555Metagenome / Metatranscriptome270Y
F017396Metagenome / Metatranscriptome241Y
F017714Metagenome / Metatranscriptome239Y
F018099Metagenome237Y
F018585Metagenome / Metatranscriptome234Y
F024181Metagenome207Y
F024911Metagenome / Metatranscriptome204Y
F025498Metagenome / Metatranscriptome201Y
F025814Metagenome200N
F028919Metagenome / Metatranscriptome190N
F032645Metagenome / Metatranscriptome179Y
F033182Metagenome / Metatranscriptome178Y
F035025Metagenome / Metatranscriptome173Y
F037486Metagenome / Metatranscriptome168Y
F039353Metagenome / Metatranscriptome164Y
F040373Metagenome / Metatranscriptome162Y
F041046Metagenome / Metatranscriptome160Y
F042521Metagenome / Metatranscriptome158Y
F043381Metagenome / Metatranscriptome156Y
F044672Metagenome154Y
F046710Metagenome151Y
F051316Metagenome144Y
F052286Metagenome / Metatranscriptome143Y
F058238Metagenome135N
F069283Metagenome / Metatranscriptome124N
F072562Metagenome / Metatranscriptome121Y
F090808Metagenome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0207447_100198All Organisms → cellular organisms → Bacteria1299Open in IMG/M
Ga0207447_100401All Organisms → cellular organisms → Bacteria1062Open in IMG/M
Ga0207447_100415All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1048Open in IMG/M
Ga0207447_100642All Organisms → cellular organisms → Bacteria937Open in IMG/M
Ga0207447_100694All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria918Open in IMG/M
Ga0207447_100888All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium862Open in IMG/M
Ga0207447_101051All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia825Open in IMG/M
Ga0207447_101164All Organisms → cellular organisms → Bacteria802Open in IMG/M
Ga0207447_101419All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium763Open in IMG/M
Ga0207447_101470All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium757Open in IMG/M
Ga0207447_101709All Organisms → cellular organisms → Bacteria726Open in IMG/M
Ga0207447_101804All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria717Open in IMG/M
Ga0207447_101854All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria712Open in IMG/M
Ga0207447_102041All Organisms → cellular organisms → Bacteria694Open in IMG/M
Ga0207447_102069All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia692Open in IMG/M
Ga0207447_102093All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria690Open in IMG/M
Ga0207447_102407All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium665Open in IMG/M
Ga0207447_102574All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria654Open in IMG/M
Ga0207447_102833Not Available639Open in IMG/M
Ga0207447_102910Not Available634Open in IMG/M
Ga0207447_102938All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria632Open in IMG/M
Ga0207447_102954All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium631Open in IMG/M
Ga0207447_103443All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria603Open in IMG/M
Ga0207447_103676All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria592Open in IMG/M
Ga0207447_103703All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium591Open in IMG/M
Ga0207447_103858All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia584Open in IMG/M
Ga0207447_104111All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon573Open in IMG/M
Ga0207447_104130All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium573Open in IMG/M
Ga0207447_104254Not Available568Open in IMG/M
Ga0207447_104277All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria568Open in IMG/M
Ga0207447_104466All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium561Open in IMG/M
Ga0207447_104646All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii555Open in IMG/M
Ga0207447_104956All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium545Open in IMG/M
Ga0207447_105140Not Available539Open in IMG/M
Ga0207447_105226All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium537Open in IMG/M
Ga0207447_105273All Organisms → cellular organisms → Bacteria → Terrabacteria group535Open in IMG/M
Ga0207447_106604Not Available502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0207447_100198Ga0207447_1001982F018585MAVPTLRRLVSSRGLPGRGLDLETLAQLHTTLVDERQQLRQDGAPVEELERNRLAIVQCQWELSQALIERYLPPAAAPSAA
Ga0207447_100401Ga0207447_1004012F008061VTADRIVLTIPRNEGFENVAQLVLAGVAARLNFTYEVVDDLGTALETLLERRGEEGELTVELEVGEDTVKAALGPFAGDGLRAELEQPDDGVGLRRVLETVVDRFAAVQREDGSWIELEKRVEGIESAK
Ga0207447_100415Ga0207447_1004152F039353VSRKISYCDGLHFADAKDSEQPLPPTAVVGFKSAGAAKDRSLAANIDADRALISFKEMPITHVEANHNALKVARGEIGGLAVEAATLINDFEGRQNPPLLDIVEFDGLIWELDRNRGH
Ga0207447_100642Ga0207447_1006422F001262MAVGDEIDEIFRREVKSLPAYAKAQGAAGSGVAPPVDEMNQLLMGLVVAAQRSFHLLADRIEDLGSA
Ga0207447_100694Ga0207447_1006942F013555VESRGQQLLQDARKLVAESWCHGADARDANGFEVDPWDDDAASWSLLGAVVAVLEREASLSGELPLDELGAALYALADLIETDSLVDWNDDQGQTQAKVVAVLDQAAAAYEDSCAVLELSLN
Ga0207447_100888Ga0207447_1008882F040373LRGPRLALGVAGTACLLLLAPLAGASNSSPYADGVADAPAAAPDLTAVDVSNDDAGNVFFRVSIPNRAALAYTDLISLFVDADGKTGTGCAR
Ga0207447_101051Ga0207447_1010512F006951MTAGAGPGPGGQGHGSKESGPARGRDFGDFVRLALNTAADQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK
Ga0207447_101164Ga0207447_1011641F000268GIAAEAMSYSFVSKASGRLGGPIRFEFYRDSTTSPKTDIKSFTVSMRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGSSGVTFGFDKNGRMTFPDSFDR
Ga0207447_101419Ga0207447_1014191F035025DPAEARNWLIDRLSEIHAGKYVGGIFDQKMVEVMMPSRTERLAVEVMMPSRTERLAFWRDEYALDSFTVLQRLLAFMLSQSQQGPQMRTWLTVSATVLYARPFKQWPEVRLAEDDVPIKYREVHNEVLKYRDKVIAHRDPDAHKRDIWGTELPIVSEGNNIFIPTTNHAMEDDIASSLVELVEILIPMLKARSSSFVSKYLPRPLAPGAYVLSLEENPAEWIKPATPT
Ga0207447_101470Ga0207447_1014702F090808VGLLLLASNASAAPRVAVRVVPVFPPKLYAPRGAVGSMVPASGSTVSRATALASLTRGKLENALLGGKPNGKPLISLGGPPAPVTIYVALPPAGKHHNLDRYPIAIVGGGYHGLLLS
Ga0207447_101709Ga0207447_1017092F072562MKNRKNYVMTKSNLTLTQSGLLAVLLQRQRYKVIELARRRAHREQARAAFRSTLNWLLAFAHGGIAGRPLRR
Ga0207447_101804Ga0207447_1018043F032645QERADTQQERIDAAAKELGEVSDRLQAAARALRQSV
Ga0207447_101854Ga0207447_1018542F051316LRARVEAQELELAKLREQLEQERTRKDVHVWPEEQPVPTTPGPVQAEHYLLCVPTAAGYVLLDRVGALPSVGQAVEVPEEEGRFTVTKVVRLPRNGRPCAYLQRA
Ga0207447_102039Ga0207447_1020391F000146MALARVVTFDGVSKDRMDEMDREMREGQPPEGFPSSELVVLHDPEAEKSLVIVFFDSEDDYRKGDEILSAMPAADTPGQRTSVTKYNVATRMSS
Ga0207447_102041Ga0207447_1020412F005035MNMTATIKRVVTRWTLPALVLIAGGFVCDGLTEVGHHAFLIAGGIALGIEIGRENR
Ga0207447_102069Ga0207447_1020692F017714MSDAVEEERCRRRIDPLDELIWHWGMAYRIWAADGTWYARRHDHGEIMQATDPERLSFMIRDDYFGRSGPGADSPPERP
Ga0207447_102093Ga0207447_1020931F024181MADARQPTLGISLIAVLAGGAISSWISAAFVDIAPATSVEAWAILTSICGAVGVKVVLRFLKYDVPIAFAAGALMAGRLVSLALVQAMPDLGGHAIPGFPAYGLFSSFPSLVLSAWLVQISAGRIRALMY
Ga0207447_102407Ga0207447_1024072F002103MSTDEPFRTDYEFLKGVDYIFVSLDRNLSGEECHELAEKYFETHKAMTLPGQALRVDLRPAFRKPLADVTPKFRAVSIGHTFTPQR
Ga0207447_102574Ga0207447_1025741F004558QCARIAQPAASRNRERTSVSLIGSVSGLMGDDLVSSDPPAGMRPRALRGRVSSAGKGARAHALKASDALVEAVGALADRAIDRMLLTGEPVTSAADGKRLLARQADTEAFADDIQRIVVLAVPVVRTLARGARFTKVPWVMVVSSAVSIGVAVRTGVRELQVLSSLVAHRLEQAEGVPSDPALVKKLAIDLYLAPKRTPRLADDRLRLVRLTRKWVF
Ga0207447_102833Ga0207447_1028331F000569MDLQIKKVWLPGAAGCLLFFGFHWVLIWLPFDKNRFQFMAIPYLVLPFVGALAAYWSRRMKGSVLERIVSALFPVFAFVALFAVRIVYGLFFEGVPYTLPHFLGGFSVTLVFIVAGGLLLVLGAWPFCRPHLREQLP
Ga0207447_102910Ga0207447_1029101F018099MARTYIADIAGGTATVTIQIQATQTLKSATWSGVAAAAGKYELSMASSSQIGTAQPDSNVIARLSLGVLTSGGTFAVQMPINLPVKAFQNVYVHCTGAGNLGTLTLS
Ga0207447_102938Ga0207447_1029381F001415VEKDIDMQAVSAAIAGFLACHVLTCRFLAQEGVVDRDRFTAYLETAMAEMAPGIEDQRALFGLRQLIAA
Ga0207447_102954Ga0207447_1029542F043381LHIQGGDADVTVQGAGTTSVRVPAGTYRASVVKATITAQGQTVEVTVWIAQGTGPVKTEVVIRAPGGTGLTTNELLSFTKAVSVIGDGS
Ga0207447_103443Ga0207447_1034431F033182AAHHRVVSRGAGLPMAHCSPLDEEEHLPATDRLHRLIGPDLTRLLLVALAGDHRMGSRRVAA
Ga0207447_103676Ga0207447_1036761F052286MSMPRALLAVTLVLAAVALPAAASSAPVSTSFKIVGYEYAFTSTVGSFAGTGSGDAGGTAYWNATVKHDRLGSDPTYVNGGPFAMAIRGPGRSVDAVVGTFTHHGGKITTLDRGANCTNQKYLVAD
Ga0207447_103703Ga0207447_1037031F041046MSAVVTTVIAALSGFAALASVFLYLHFGRRSELATAREEALALAETRRQVIGDLQADFDSLERRHKRMKAEYERRTRELQTALDTTRTQAREEAYRTQHFYAAALSDLLNDLRDDL
Ga0207447_103858Ga0207447_1038581F025498MKQKKIETHKIGLVGQAPSRRGDPRKPLAGPNGQKIARLAGMSYDELIACRRRHLNTHNGKSGKADAFDHAKGRVNAADVLLDWRVERIVLLGKNVARCFGFRDLPFLAEIRIYGRRFLIFPHPSGVNR
Ga0207447_104111Ga0207447_1041111F017396FNIYLRYTIYKFIMSEYPYEDKIHTDDRVNYKTVYSSDGIKMGKVEAAFSDSFIVKLEKENNIEIKYEIPRLEISSLTDDRIILKLKQGQIDEKYQTSSIKKSSED
Ga0207447_104130Ga0207447_1041301F005895EPNWKHRFQGRDASDEYGVTEMGYSPRRLKRLLREAGFVEITRFHNNRKRLFANTPREIAAHIAEPLVYRALGLFWTQTWLRATAP
Ga0207447_104254Ga0207447_1042542F069283MTVTAIPPRTTRPRLAPYTAASGDMVLPGCYGISRGQGITGDLIRHAAGPRPGHAFIYIGNGRIVEVAPPAVRIASAASHPDALWNA
Ga0207447_104277Ga0207447_1042772F037486MGVTGLWDWIRGIGGKPEEEADLREEFGGEDPGEADERYLSEAGYGAGSGFGGGLSIGDAAQA
Ga0207447_104466Ga0207447_1044662F001985PGVKVLAFANSFASTIPPGYLVQGSRDELLQRVESLRDVLRQMSADQLKVNEITEEDRRIQLALYEKLCAYLRTPK
Ga0207447_104646Ga0207447_1046461F028919RAGYHVIAYETTTAVFMAADPAILRDLISAMRKDLESQISRQRSEGVTEFGFFGSSLGSFILYNCIGDALPALRWGVFNTGGDIAQGMWRLDGARRQHLLRGWSLPRLEAAWADLQWPQFGRLDGCRFVFVSSRRDTIAPLDDIAPYLGPMRQAGAQVSVLEVRAIGHLTTIVAGLWQAPRIIA
Ga0207447_104956Ga0207447_1049561F042521AEREAINRTLDRFVNSAVKRHDVAASWNLVTPEMRAGVSRSAWDKGNLPVIPYPAGGTTFHDWTIDSASATEVDFELMIPSAKSKSDSIQFNGTMRKQQGRWLVDSFNPSATFGGGAVVGPHDFTASSGEGGGKGVARLGSVWIAVPAALIAGGILCVLGFFAYIWLRNRRAYRRANLRP
Ga0207447_105140Ga0207447_1051401F058238MTIARKVAIAVVVCAATGMTTQAEAAKRKAAGPTTLEGCPYWVPVCGIVMGSGSNTYVLSGALAPSVPLYTPVRVRGRKTRDNNFCGGTQFEVQAVGRSQKSCVWR
Ga0207447_105226Ga0207447_1052261F046710YIFGIGCMLIAARFGNDTLTAAAESSVQPEPPWIEIGPEKAAIARDSKSADGRNALAWTVDSSESIDWSLLEKDPNRFYEQYEVKAIWVINLADKKKVGAIGDTGGYIRPGSHRTLSVAWGPIENGRRFALAAYQWKWGTDTLLLLDVGQGDCRSAQIGPVLDKAIEAQIKRGKSQKR
Ga0207447_105273Ga0207447_1052732F024911MLLFVLGSAALAFWVAICRPRLAPANFRSGGIHLAAALVVGIILGPVLHVVPGLPSALSLFVALFAVGLPAITYMLLVGMWL
Ga0207447_106604Ga0207447_1066042F025814MRTIRAIPLMALAVAAAGCGGGVSKHYDASEVRGCLVDKNLSMKPADLPGDVSPDGTEGDLAVQVGDNEVDLAFGKDSSEAKSNAQEEMAAARIALGANADDYVRTKGNVAYW
Ga0207447_106675Ga0207447_1066751F044672KMVDNDQSFSQQAIADGTALGTPSLRVHDDTGKDFLLARGAYSAAWRHDGAIAFVKGSDPDFRAGRSYTGQVVVRSDIHGRDAAWTSEPAHYVVYAWAGDRLLLYRVGLGEKLELLVAEGPGRIRPLADGSAIAISPDATRVAVLSQDGTSVRVLDIATGSELAWL

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