3300027443: Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G05K4-12 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300027443
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072110 | Ga0207477
• Sample Name: Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G05K4-12 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 19542208
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1
Not Available	5

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Michigan
• Coordinates
  • Lat. (^o): 42.4
  • Long. (^o): -85.37
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010550	Metagenome / Metatranscriptome	302	N
F017166	Metagenome / Metatranscriptome	242	Y
F019338	Metagenome / Metatranscriptome	230	Y
F033862	Metagenome / Metatranscriptome	176	N
F035945	Metagenome / Metatranscriptome	171	Y
F050357	Metagenome / Metatranscriptome	145	N
F052573	Metagenome / Metatranscriptome	142	Y
F058652	Metagenome / Metatranscriptome	134	N
F087168	Metagenome / Metatranscriptome	110	N
F094026	Metagenome / Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207477_100016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2145
Ga0207477_100521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	962
Ga0207477_101590	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	687
Ga0207477_101839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	658
Ga0207477_102726	Not Available	577
Ga0207477_102989	Not Available	561
Ga0207477_103108	Not Available	554
Ga0207477_103308	Not Available	543
Ga0207477_103873	Not Available	514

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207477_100016	Ga0207477_1000163	F033862	MPRDPFAELEAARATVLEESERFVGELQPVLGPSLHAGFERLRLAQPEHVGRLDGPTLAALGTAVDRAIELGVAETVERLHSPEIWLSPLTAPELPPRVDPARPLGLPEWVARLGGSTREGSSLGRLDDMTNRIWVAISAAARPLDPVLEEFGFRPERRRLGGGSFGVAARTLPQLDPSGAVAQRWKRYRAAYERLTTLAAFDA
Ga0207477_100521	Ga0207477_1005212	F052573	VRRARALAAAPVFAIVLFAACSTGETQVQGGSTSPTGPTETGPTATGPTGTTAEAGLGGAVQLDLSQVDNSTGATMFSCDGVEGTWTYDPGQLDIEGVEITMEPAQVDMSGGTGTLVISGQVQLPGAGGAGFTDTVKLRITGTADAPALEAAGVHVEATGAL
Ga0207477_101590	Ga0207477_1015901	F058652	STAMSGERGDSWNSSWKPLGCRADVVTCAELSAVGSPDHALVMCDLCDRESLVRLGEQFLCASCAMDVLREGVEDLDAVAGARSADQIEILTWGEPETVLAHGLEVGRMVREGTMQLVDAAAAHHQALARSMKRAREAAECVRRVEAGAVLFNVWAFSFDARLEDLEEQNRALRLVVRELERHVARIPIVRTPA
Ga0207477_101839	Ga0207477_1018391	F087168	MGDLFGNDAWLTLVLGAAFVATFLLGVMLLSTRTKGQQRRSLATLMGRGGKKQEAKESSWIPAGMAEAGDRLATASGFSGRLEAMLEQAELPMKAGEFAALIVLCAVAGGILGALLLE
Ga0207477_102726	Ga0207477_1027262	F035945	MSDFSHEPERISRLEAWSLALATALVALIAIGIVPHMH
Ga0207477_102989	Ga0207477_1029891	F050357	VEGIRLWRANRQKLVGMVYLDKGVLDLDIQDDHERALVEEVFEQTGQVTWSFSRFDEGEWQENVAEPRTERWLWFVVANILYPMGYQADLGVGEDG
Ga0207477_103062	Ga0207477_1030621	F094026	TDAMKPCPNSCATRVSSFGVDGIPDARGVHRIATAQDIEVAGTESEQPSDSYWVGFTVGSVVYVMELHGPPGGSVSEEQSQEIASAYYDRLKGN
Ga0207477_103108	Ga0207477_1031082	F017166	GEMSDVRSIKAAVTAAADSTAVALSQSANPERNTDADADGIFIKHIQTSSTLEDVSVKQSVEPISAGRLRQSVKVTARARTTLSEFFNMQGAEIDITATHDFDRKK
Ga0207477_103308	Ga0207477_1033081	F019338	GAFLIVGAIVCLSTAQFVFAQEVDPRCKDIYDKVACTCAVRNGGHVIPPPVGVKREGLKLRPKEAAGGTQTLDGGRVAFPKYYRREGLKFRRSDAIEGYLGCMRAAGRK
Ga0207477_103873	Ga0207477_1038731	F010550	VGDRPRRHDEIKGATVLLTGWSEGREREVADALGTISTEPVDLDDVELPFVALPKTTLEKAEAARDLLVEAGGSVDLQDAWVTRDAPRPVAARPTCPFCGSTKTQPYTHAGPAARTSMKCTTCGQR