3300027405: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A1-12 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300027405
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0055675 | Ga0207464
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A1-12 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 10576021
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.2958
  • Long. (^o): -89.3799
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020927	Metagenome / Metatranscriptome	221	N
F034564	Metagenome / Metatranscriptome	174	Y
F040803	Metagenome / Metatranscriptome	161	Y
F084687	Metagenome / Metatranscriptome	112	Y
F087420	Metagenome / Metatranscriptome	110	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207464_100095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	893
Ga0207464_100265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	730
Ga0207464_101662	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	511
Ga0207464_101713	Not Available	507

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207464_100095	Ga0207464_1000952	F034564	VCIAGLGFGLVGERRPFGENILAHPFIVYAFVLAAGLLVIRVVGQRPVPELIPERALGLGCAAGVALFLAGNFIAAHLIGR
Ga0207464_100106	Ga0207464_1001062	F084687	MKLVRYRSASGEKPGLILDGEIFDLSGSFEALNPRAPTLDDIEAIAAVPAKALVKVEKGVVL
Ga0207464_100265	Ga0207464_1002651	F087420	MEPTLGIRAKRSAAGGAIVLVLCALPHAPASAAKPPYAGCVVVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYWYCR
Ga0207464_101662	Ga0207464_1016621	F040803	MELLIAVGFFGLISALVYFVLASKAPIADEAIQRRLQNIGFQNEARTQIRLHETEEITFWEQVSNFFFGDRELPERFNNAARRLHQAGYRGNRAVRIYWGLRIFLCLAFGFG
Ga0207464_101713	Ga0207464_1017131	F020927	MWAAFVRQFAAYAITRRGKKLFALIGVLALCFGAALLIDMQFYVSASFAALLAGFAAVTYVVQHVKLKRAEHQRLLRKAEAAHQRALAAQARLERIDTAKSALRGAVTGAGRLVTDNVSIVANEALLMANETADTIT