NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300027182

3300027182: Bulk soil microbial communities from Harvard Forest, USA - 3Bulk_unsorted metaG (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300027182 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0053064 | Gp0104122 | Ga0208952
Sample NameBulk soil microbial communities from Harvard Forest, USA - 3Bulk_unsorted metaG (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size112518851
Sequencing Scaffolds42
Novel Protein Genes45
Associated Families45

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium10
Not Available14
All Organisms → cellular organisms → Bacteria → Acidobacteria3
All Organisms → cellular organisms → Bacteria5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Mucilaginibacter → unclassified Mucilaginibacter → Mucilaginibacter sp. BJC16-A381
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea → Ixodidae → Ixodinae → Ixodes → Ixodes ricinus1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameRhizosphere And Bulk Soil Microbial Communities From Harvard Forest, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Bulk Soil → Rhizosphere And Bulk Soil Microbial Communities From Harvard Forest, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biomelandbulk soil
Earth Microbiome Project Ontology (EMPO)Host-associated → Plant → Plant rhizosphere

Location Information
LocationHarvard Forest, Massachusetts, USA
CoordinatesLat. (o)42.5502Long. (o)-72.1737Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000098Metagenome / Metatranscriptome2300Y
F001931Metagenome / Metatranscriptome615Y
F001959Metagenome / Metatranscriptome611Y
F003465Metagenome / Metatranscriptome485Y
F004499Metagenome / Metatranscriptome435Y
F005456Metagenome / Metatranscriptome400Y
F005488Metagenome / Metatranscriptome399Y
F006438Metagenome / Metatranscriptome373Y
F008217Metagenome / Metatranscriptome337Y
F011032Metagenome / Metatranscriptome296Y
F011694Metagenome / Metatranscriptome288Y
F012406Metagenome / Metatranscriptome281Y
F014074Metagenome / Metatranscriptome266Y
F014774Metagenome / Metatranscriptome260Y
F016050Metagenome / Metatranscriptome250Y
F019008Metagenome / Metatranscriptome232Y
F022702Metagenome / Metatranscriptome213Y
F024370Metagenome / Metatranscriptome206Y
F024627Metagenome / Metatranscriptome205Y
F025372Metagenome / Metatranscriptome202Y
F027788Metagenome / Metatranscriptome193Y
F030127Metagenome / Metatranscriptome186Y
F031284Metagenome / Metatranscriptome183Y
F032390Metagenome / Metatranscriptome180Y
F033975Metagenome / Metatranscriptome176Y
F034296Metagenome / Metatranscriptome175Y
F036801Metagenome / Metatranscriptome169Y
F038779Metagenome165Y
F040813Metagenome / Metatranscriptome161Y
F041339Metagenome / Metatranscriptome160Y
F041374Metagenome / Metatranscriptome160N
F041387Metagenome / Metatranscriptome160Y
F045267Metagenome / Metatranscriptome153N
F049906Metagenome / Metatranscriptome146Y
F052093Metagenome / Metatranscriptome143Y
F059090Metagenome / Metatranscriptome134Y
F059212Metagenome / Metatranscriptome134Y
F061155Metagenome / Metatranscriptome132Y
F075478Metagenome / Metatranscriptome119Y
F086112Metagenome111Y
F095863Metagenome / Metatranscriptome105Y
F096405Metagenome104N
F097709Metagenome / Metatranscriptome104Y
F097869Metagenome / Metatranscriptome104N
F103998Metagenome / Metatranscriptome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208952_1000600All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia995Open in IMG/M
Ga0208952_1000866All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium920Open in IMG/M
Ga0208952_1002881All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium697Open in IMG/M
Ga0208952_1002950All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium693Open in IMG/M
Ga0208952_1003224Not Available677Open in IMG/M
Ga0208952_1003470Not Available667Open in IMG/M
Ga0208952_1003887Not Available650Open in IMG/M
Ga0208952_1003959All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium648Open in IMG/M
Ga0208952_1004488All Organisms → cellular organisms → Bacteria → Acidobacteria630Open in IMG/M
Ga0208952_1004710Not Available623Open in IMG/M
Ga0208952_1005023All Organisms → cellular organisms → Bacteria614Open in IMG/M
Ga0208952_1005156All Organisms → cellular organisms → Bacteria610Open in IMG/M
Ga0208952_1005242All Organisms → cellular organisms → Bacteria608Open in IMG/M
Ga0208952_1005677All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium597Open in IMG/M
Ga0208952_1005688All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium597Open in IMG/M
Ga0208952_1005799All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium595Open in IMG/M
Ga0208952_1005847All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium593Open in IMG/M
Ga0208952_1006708Not Available576Open in IMG/M
Ga0208952_1007053Not Available570Open in IMG/M
Ga0208952_1007682All Organisms → cellular organisms → Bacteria559Open in IMG/M
Ga0208952_1007759All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium558Open in IMG/M
Ga0208952_1007878All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria556Open in IMG/M
Ga0208952_1008335All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium549Open in IMG/M
Ga0208952_1008346Not Available549Open in IMG/M
Ga0208952_1008740All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides543Open in IMG/M
Ga0208952_1009174Not Available537Open in IMG/M
Ga0208952_1009274All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium536Open in IMG/M
Ga0208952_1009308Not Available536Open in IMG/M
Ga0208952_1009469All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Mucilaginibacter → unclassified Mucilaginibacter → Mucilaginibacter sp. BJC16-A38534Open in IMG/M
Ga0208952_1009761All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea → Ixodidae → Ixodinae → Ixodes → Ixodes ricinus531Open in IMG/M
Ga0208952_1009965All Organisms → cellular organisms → Bacteria → Acidobacteria529Open in IMG/M
Ga0208952_1009981All Organisms → cellular organisms → Bacteria → Acidobacteria528Open in IMG/M
Ga0208952_1010191Not Available526Open in IMG/M
Ga0208952_1010507All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium522Open in IMG/M
Ga0208952_1010511All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium522Open in IMG/M
Ga0208952_1010623All Organisms → cellular organisms → Bacteria521Open in IMG/M
Ga0208952_1011150Not Available516Open in IMG/M
Ga0208952_1011350Not Available513Open in IMG/M
Ga0208952_1011356Not Available513Open in IMG/M
Ga0208952_1011456All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium512Open in IMG/M
Ga0208952_1011714All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium510Open in IMG/M
Ga0208952_1012244Not Available505Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208952_1000600Ga0208952_10006001F096405LISLGVYDGKGKLVRILKKAASIDSFKSGLNGLFIDWDKNDSQGKPVPSGKYFAKGVLVGDVKIAGVAFHLNDWIVDANGPRPRKILSVALLPDARPALLSETTKQEYLLVEDGRQRIKSVPLDFNAQTIKPAGANLLVFDSSKLALVAPDAGTQTQPQTFSEIRDADAFGERILVLSGNQIQYEIAGSIQNVQAPAENLSRCAVLGSTIIVATKDSKVYRFDGQQFVLSDPGQPGELLDLSAGARETAWLLLKTDPVLLLKQIDPAGRILREIELPPELRTVSQIAASRDEDSLLLTSQTGDTQRVVGVRFQTANQAKSVWEKWLDRGLT
Ga0208952_1000866Ga0208952_10008661F086112MGGRNAPVLPPYGRWFSRLGLKMLAGVDMPSHLADFLAHGSVVDCSRLGAEFGWKPAFSSRQAMDALARGRQMEQIEPPSPPQEYELQVYLQQRRRRARFLN
Ga0208952_1002881Ga0208952_10028812F014774AMCTAGLAAQSQETQTTTKTRTEIKGGKSVTMIGCVERRADGGFILTDVRDNRRLEHSRYALVSDKDLSRHVGQRVEIKGKAVVNGDGKVSVESKTKTEVQDGRDQETKSRIEATSGEFDLPSLGVHSLKTISSSCN
Ga0208952_1002950Ga0208952_10029501F041374YYAEDVEVSTDTSPDPLVGKDQLKSLLRRFLVPLHMMAEIGGLWVSVHEASIPGDSLDEQHSEWSLELIGVTGRRVTAAWCARRTWKQSRVVSEYHYAHSQDGEPLSFDDLRIAAPPDPDTVTPS
Ga0208952_1003224Ga0208952_10032241F036801YQVFYGDAVAIERRDRHLDERVRAERFSTEHEALNRVHDLLQQDSNTAVAIQDGAGNELSGIRLQLRLGYSCDD
Ga0208952_1003470Ga0208952_10034701F032390PQMFTETPDLIQGLVQEGTGIHADVFKRVNAAYPYGVRLWDGDTGNTLDVRLCKSLDDAIYSARGAMSSQRAQRALSGKERAA
Ga0208952_1003887Ga0208952_10038872F003465MSVEITSRMDEKPTPTVEMSLDALSTAVGKASEDLSAVRSALDLARANIATRNTSLSREVVKDAERVIDHLRQADERLRDVLKDLAERD
Ga0208952_1003959Ga0208952_10039591F041387TVHDLLYRPQETPEEAVLEAILAGLTSVFREFNDLLGCVQAQRAERPPALTASVKTMSRLAREICGDCVPREFAPALRIWMDQIQRMASDVERI
Ga0208952_1004488Ga0208952_10044882F001959MKNLNSVFAAYMIGWAVFFVYYISVSRRTAALREEIERLKSSLTRGK
Ga0208952_1004710Ga0208952_10047102F027788MTTVGSSAADALLGAVAVTLLVVMYGQWLYRSRRLRRCQERLRVVRELIADGERTKTAYADASDASAAHGGFLQRCDSSLRDQFGDSFARRIAAYSEFEWIQPASLISNEQVFAWYDTERRLAGLRELLYEALLDLGETWLALG
Ga0208952_1005023Ga0208952_10050231F075478VRLGVYFACSDQTGLARVAMPQGTYGLDVLKTGYEALSRVLDVNGDVTVEVEVAVTSPENPDAYWLFDPTA
Ga0208952_1005023Ga0208952_10050232F004499MMSTFKTVVAAVAVGLLLIAAVAWAASDEKTITGVISGVNPTTRIATLTPAGGPPIVVQFAFNVGGPCNTCLGSGRSGPTFAETVTEGSTWTLTYTSSVPAGAAAWFPGGTVNTVLRAVPVK
Ga0208952_1005156Ga0208952_10051562F011694MAFATGPKDGGDPSEKELVARLRKFVEDSDLSFYKIASRIGTSGGILSMWLAETTKPRPKDLDAIEKFLKR
Ga0208952_1005242Ga0208952_10052422F005488MNHERRGLVLVVAVLLVSAVLGGIYGPSVRATTSSTDDYQTAVRE
Ga0208952_1005677Ga0208952_10056772F019008MGKEALGFALLGVVALGIFAHSFLPRYEWREVRETSAISIIVYDRWTGRIQRAVYDDKGGLNVMGVYTPF
Ga0208952_1005688Ga0208952_10056882F038779MVLWGDGRHDDTAALNAWLRGDALVWAETGEPVGPVIADRTFRLSAAVYAVGGAGRKLERFRLIWPERGETVSGGTVMSADDPDMAPVVSGVTIVGGDPGEAVPFDAPDPAPPDRDERASCGIS
Ga0208952_1005772Ga0208952_10057722F031284MTPTNFPTKTTSDRLTTVLSYGALLLLIYLVFRIVEPFLEPLA
Ga0208952_1005799Ga0208952_10057991F059090MTPVRGGYAVDVPVINVSERARLENATVWSTFQAFAVTLRRLFTSLFKGDTPTINYPEQTRPYSERFRGTHI
Ga0208952_1005847Ga0208952_10058471F049906GKWAAHVMRPAPAGPQDLTITLNTSEGKVTGSIAIQGGGQSPIDWGMVKGDLIVFKLKMPFQDRTETFVYLGRLEADHIAFGRRPEDLTIGQLVEFTGIRGK
Ga0208952_1006708Ga0208952_10067081F045267VGGMPMDCKQANATAFRQWRSWLPGGGFEPPTFGLCDLTHLSVRVGLYLHPRGMLAIQSPRLPPPFRGLGSVLPYRSRDVGSTDFDE
Ga0208952_1007053Ga0208952_10070531F034296MGIHGLKIMLATGVALLTTGALFAQSVDQNGVDSLKAQMSQMQRQYEQRIEAMEGKMKTLESNADRGSILNARVLTDADGKEVAGKAPAPMLDESFLKSLTRNFSFSVYLRSGVGINGNGGPQDFDFEIPDFGLGRYRLGNEPD
Ga0208952_1007682Ga0208952_10076822F016050MNLKLIANEENQDRAQCGKNEAGGMISFVCRPRKHVGNGAADDRSEDAEHDRPEDRY
Ga0208952_1007759Ga0208952_10077591F059212MLRSRFVRSFVLVLTTFIAISCADYTPIEPIAAPTIAAPTKAQDGLIGDLLGLVFGLLGTIIKVIEFQSDPNGIPVTAIHWAPTHVNQVRTVSGTIGYNGGSLAIPGSDFTINFPKGALSTSRWISITSDASGYVSYDMKPHGL
Ga0208952_1007878Ga0208952_10078781F022702MPFDGVGFVTHESLDKLDAAVELIGTPDRWCKGALRSHDGRYCIRGAVRAVDGAELLEPAILQAVVEVAGRRFRRIEAFNDHPNTSHDQIVAVLSRARDNIIAGKPVGNTARLRETTASMLASWRGALLCW
Ga0208952_1008335Ga0208952_10083351F014074MSLERELAALKFLDGLGAHLRDGREPHKALRHTLRDTREFFQATHGCIATLYAGRPAADILFKLPKQADWDLGVLTRYIRHTHPPVQRDMLIASVRRRGGAWGAIALVRPGLPYDQEDRRLLIRIASALSGAIHRIDRDRLL
Ga0208952_1008346Ga0208952_10083461F095863GKHQLTYEITTDSIACTAEPKSLPSYIPFQTTQASVTEINKERLKFERVATRFSVIMGVIPALAFLFSGVTALPGFAVPCILVGAWIFGAFLAYVSSLFVLNRFCPWKKLVLTAVFDGILPKVTREKARAAKDHFDGLYLVVDQQQRWKSSLLPDPRPRALDPLLIGELKQGRCRKFFLIHQF
Ga0208952_1008740Ga0208952_10087401F024370HPHFTPDINLGHLVQAVVVVTTVGGGILAGYLSLRGDVDLQRAEFRATLAGHEARLTVAEHQLQERHAEDRQFQAETRAALDRLLEAIGGLRTELVQKQNRK
Ga0208952_1009174Ga0208952_10091741F103998MLAGAPATNEDGPSACGEIPFSMSDLAYFDYALVLPEERYLIEVQVGNPATGVTRRNDELENLAKDALITVVGQGRDDLAEKLKPTPINESDAKNLTKVQQLLSGPDCAVYLVE
Ga0208952_1009274Ga0208952_10092742F011032IRIYTIGMSFLVRYMLGTMPELPEDILKRIANDATSPDFNAVQLKGNYYFAQTSADVGPAFQNIQNQIIRLTK
Ga0208952_1009308Ga0208952_10093081F024627ALDADRKNGPTARSFAADAHDCIMVRIKRPYRIQVCGTKMRPNGKLPSDPQQNRQAPSDAEAMQKAPVAVHHRSACSGVKALRNTSDARRQAAKLCYRFGPLTPSARSANLIAGDGTKNGFPAPNKEPAKTKNDHLTGKAPYKFESISLQRRVRSELRIASDKAERDLGQSDVDFRAE
Ga0208952_1009469Ga0208952_10094691F097869MAADASWADILVMRNPDGSPDTFRQEETVALLSDEQIDAIRPFAEELELPADQLVLREGQTELDFLVVLRGGIEFSATDSFGQKNIPVVRLPERSFTGDLSFFTNTPLVGDGRTSGATR
Ga0208952_1009761Ga0208952_10097611F097709SALLWALARMREGADPGSLIAEAARHGIDIAALPAFAARLR
Ga0208952_1009965Ga0208952_10099652F040813LGGFLNRWKQKIVLFAGALGAPGLFLISFLDSSVLTFPVINDLLLIE
Ga0208952_1009981Ga0208952_10099811F033975SFAQGSRNVAVDPRGTDRYDKLSLLSLRADKSFRIHGSRRASFVAELHNVLNSSAGQNTYGSLTQGFASQAAFDAARLSTSYFGRVQEIVAPRVLKIGVKLEF
Ga0208952_1010191Ga0208952_10101911F006438LGLTCMVLGDDNYSALAAQGYRWVTVNGPYACNTEQDVERITAHHTDATELQVVQNIQCYYLIPGTIVQVIKEDRARGMSEMRLGSITRSLWTYTRFLSKHPIQGTYGIIETPENFGLMPSVDTVFISTLPSDNFDSSDSAERNSVSPKSRTHIRSTAFYA
Ga0208952_1010507Ga0208952_10105071F030127MESKGALLTVAIPLIAFKIWFAILLLTYAPTRDSMVWIAATHWPLAIILGLLIGPGIAVYRLVRARSRRDALRRAEFMVNPPKPRKLSGPERVARGAQCSALWETVSRLEGED
Ga0208952_1010511Ga0208952_10105111F025372MGNTNGIVVFPAATNNRIRGNVAVGNPGIQQSNSLPAGAGVDIWDQSAPGNNNSFAGNMCLSGVNAPCPAFATGAIPRKPGG
Ga0208952_1010623Ga0208952_10106232F005456VKVPYVEDNATQGGQHTPSETDVSRLIRAEVETWKPRRGPDWSDLMIRLAAAGPSPWVIYTAASAALVVILVGAFLAGSWLQIGALAPQPISTHVH
Ga0208952_1011150Ga0208952_10111501F008217TVDGRAVGERFVSADIDLQVLMAGKSTLELIEVRKAGFGMPKLKDGETAVIGHFGIEVDDLEDAKAELTRRGVALEGEFDAGEVRFIFTVPQTTFGVTLQLMDYKGRRKGA
Ga0208952_1011350Ga0208952_10113501F012406MTEESFEEQQETLDPHRREERDGATLELAGRLRQQGVLLTGRETSGQLDDLMTAFDRFEAAVIARGGDLFVNTPSSNPPENPDFVIPFRVPGEDPEAY
Ga0208952_1011356Ga0208952_10113562F041339MDTKVDWDPLVGALRNEMQEKSGLIALLNRQTETLYRRDTAENERLEEQIRAQLRLISR
Ga0208952_1011456Ga0208952_10114562F001931MMRGMPAEPIKDQRHHILSGVVDALLGDLKKGNGDRDRRRQVEEWMRTLAEKYPEFKIEVGLRDYYLAEAQRLRTEFDKAADLTEKLTLGRNIETFLDRAAEYERRITDR
Ga0208952_1011714Ga0208952_10117142F061155LPVFVMVTFCEAEEVPVVTFPKLRLVGLMPKVSVAAIAVPLRPTPVGEVGALLAIERLPDTGTTDVGTNVTVIVVCFPAFTLKGSEN
Ga0208952_1012228Ga0208952_10122281F000098MRIYIIGSDGITLCREPPATVNKGEVAVASREELHAARLSGKRLLALWNALPGVEKQTKVGDRDTLIDQLWSAIEALPDPDQPSDTK
Ga0208952_1012244Ga0208952_10122441F052093MINPARAVVKILLAVGLTALAACDIGEPMAVIPEPESQLTPKPGLLTDDNGEWVIYRKP

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