3300027179: Bulk soil microbial communities from Harvard Forest, USA - 2Bulk_unsorted metaG (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300027179
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053064 | Gp0104121 | Ga0208955
• Sample Name: Bulk soil microbial communities from Harvard Forest, USA - 2Bulk_unsorted metaG (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 11211422
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_2_65_11	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Rhizosphere And Bulk Soil Microbial Communities From Harvard Forest, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Bulk Soil → Rhizosphere And Bulk Soil Microbial Communities From Harvard Forest, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → bulk soil
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere

Location Information

• Location: Harvard Forest, Massachusetts, USA
• Coordinates
  • Lat. (^o): 42.5502
  • Long. (^o): -72.1737
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008217	Metagenome / Metatranscriptome	337	Y
F064697	Metagenome / Metatranscriptome	128	Y
F081919	Metagenome / Metatranscriptome	114	Y
F091795	Metagenome	107	Y
F099756	Metagenome / Metatranscriptome	103	Y
F103737	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208955_100102	All Organisms → cellular organisms → Bacteria	710
Ga0208955_100280	Not Available	600
Ga0208955_100398	Not Available	564
Ga0208955_100455	Not Available	553
Ga0208955_100474	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	550
Ga0208955_100731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_2_65_11	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208955_100102	Ga0208955_1001021	F091795	DQSHLTVDVGRFATATPGDLSSRSVADFSKTRCDDLL
Ga0208955_100280	Ga0208955_1002801	F064697	VSDDSTAVLQGHLERALTGDAAARQRLLELTRDRLMRHARRFLHGHYARLEPFAQTDDVVQQLYIKILRNQDRFWVNADGEPLRTLAEFFGHASAWMRDVLCDLLRKEYGRDDNRPAVLPLDGGPSD
Ga0208955_100398	Ga0208955_1003981	F008217	VDGRAVGERFVSDDIELQVLMTGKSTLELIEVRKAGFGMPRLKDGETAVIGHFGIEVDDLDAAKAELTRRGVALEGETDTEAVRFIFTVPQTTFGVTVQLMDYKGRRKGV
Ga0208955_100455	Ga0208955_1004552	F099756	VTRERIEQFFKNLASALGRCIFEDAEVLGMVIPALVCVSILWLIGVAVYDFILNPYLTMAATLDSLSINPDKWIPR
Ga0208955_100474	Ga0208955_1004741	F103737	KQVLPFHGPVRFDRYLPASNKVSGRIVMGKDFDSQMGTGHKVYMNVGSNQGVKIGDFFRAVRSYEADLKDPVDSLSFRAAMAEDTQKKMPSFDPQLFEKENGPVIHVRDLPRRAIGEIVIIGVTDTTATGMIVFAMEDVHAGDGVELDQVN
Ga0208955_100731	Ga0208955_1007311	F081919	MAAPGVAEEVQKGAGAYWRDLVFSRLVPALFFSIFLARQLLFLWDGIHSVHHPSDYLFVLQQGLALAYFTMLVVLYSTRLPKRGTDHRAAVVF