3300026974: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-E (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026974
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072127 | Ga0207555
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-E (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9161460
• Sequencing Scaffolds: 22
• Novel Protein Genes: 23
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	5
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.56
  • Long. (^o): -89.32
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000556	Metagenome / Metatranscriptome	1027	Y
F000707	Metagenome / Metatranscriptome	926	N
F001033	Metagenome / Metatranscriptome	799	Y
F004992	Metagenome / Metatranscriptome	416	Y
F007896	Metagenome / Metatranscriptome	343	Y
F008954	Metagenome / Metatranscriptome	325	Y
F011193	Metagenome / Metatranscriptome	294	Y
F012827	Metagenome / Metatranscriptome	277	Y
F016215	Metagenome / Metatranscriptome	249	Y
F018513	Metagenome / Metatranscriptome	234	Y
F022090	Metagenome / Metatranscriptome	216	Y
F028904	Metagenome / Metatranscriptome	190	Y
F033981	Metagenome	176	Y
F034758	Metagenome / Metatranscriptome	174	Y
F037244	Metagenome	168	Y
F047128	Metagenome / Metatranscriptome	150	Y
F056978	Metagenome / Metatranscriptome	137	N
F064590	Metagenome / Metatranscriptome	128	Y
F072004	Metagenome / Metatranscriptome	121	Y
F080469	Metagenome / Metatranscriptome	115	Y
F090808	Metagenome	108	N
F090936	Metagenome / Metatranscriptome	108	Y
F095664	Metagenome / Metatranscriptome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207555_100089	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1075
Ga0207555_100180	Not Available	921
Ga0207555_100197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	908
Ga0207555_100265	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	857
Ga0207555_100323	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	820
Ga0207555_100361	Not Available	799
Ga0207555_100370	All Organisms → cellular organisms → Bacteria	791
Ga0207555_100371	All Organisms → cellular organisms → Bacteria	791
Ga0207555_100724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	667
Ga0207555_100786	Not Available	652
Ga0207555_100997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	614
Ga0207555_101048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	606
Ga0207555_101050	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	606
Ga0207555_101265	Not Available	579
Ga0207555_101500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	554
Ga0207555_101550	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	550
Ga0207555_101551	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	549
Ga0207555_101745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	534
Ga0207555_101866	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	525
Ga0207555_101904	All Organisms → cellular organisms → Bacteria	522
Ga0207555_102000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	516
Ga0207555_102231	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207555_100037	Ga0207555_1000373	F095664	MPFDRRHVLAQWGGTLPGGEIWSNSLRLASTDTGPDADVPDHDAMVEWLTTYAKDAVAAWHGSFDLKCSNQAKLAYLKMNVVDIAGRYIEQNTLEYLYSPVVPGGSASNIHPTQIALAVSLTTEFSRGHAHRGRFYVPMPVHVVDATTGLISVSDAIQVATAAKTFIEALADEPGPDILPGMRVCVMSQRGTGATNVVTGVDVGRVLDTQQRRRNALKE
Ga0207555_100089	Ga0207555_1000892	F037244	MAHECVILADWPGALIELCGISTLERLLRTLQRCGIERATIL
Ga0207555_100180	Ga0207555_1001801	F072004	MVDIHSALLTFTHGLVTAVSYRVLPACDPAPAHNTLHDVPRGPLLKGGLTLFFALTTSCASPKASPQLSLFARWAVFAAWTIRCWSLGLSRRYLTRTFSWMLGPLPRLSQWCIYPFLPTELRPSHNGYVVGSDAKIHTTTSVRTVISGLQSFLNVQASKFACHPGRSYRWRFRVQGSCDFYFRAPCVSLPSRTSDMLAVRNRAIDGRGFSPPR
Ga0207555_100197	Ga0207555_1001972	F090808	VGLLLLASNAAAAPRVAVRIVPVFSPKLYASRGAVGSMVPASGSTVSRATALASLTRGKLENALLG
Ga0207555_100265	Ga0207555_1002652	F022090	QFFPHGPLSVTSATGDFIPAVGSQANFNLPIRWTGSGSSVNLLDVLRGVGGPHWDIPIIGDGSATGTLFSLKSVTFDEDSLTLIGRGTTQIISSDPLVGDPFVLKHSAARIVIQGTGQDFTYNNLTVVTTAVIPEGGSGLGLLAIGLVAVEGLRRKIATRQNRYA
Ga0207555_100323	Ga0207555_1003231	F056978	MRRTLKRTKSKKHQGRVRDLKPVKEVKGSGKIEHAVEHHETAVTEDAKELKKLREEVTQIKSDIAHILEALQTLETWVPMSRAEIPQYAWAYRKFVDITTHLRQEARSH
Ga0207555_100361	Ga0207555_1003611	F011193	ALNDKAMKRDVKVLSQRSGGALVSGLNGGESVITAAPETLKDGDKIKIKGQS
Ga0207555_100370	Ga0207555_1003701	F007896	EHHVSGRTGQWPSCSGAYFRENAAPLHSDLARRQSYARGFTLRFVERANYVSPKMTTRSRLRVFHFADYESTTISEKALCQLQDREAQERGARDLQKPAP
Ga0207555_100371	Ga0207555_1003711	F012827	IDLLAMLDIRANDEHFPISLDPETIRSAGMVMPLSGKNGFYIVDAGEVFAGISNLEELEIGPHAIQLHREIFGLHLDFENLPQIANGLVPAERQKRDFLPGIISRGKKRKALDVVPVKVREDDKNLFLLVTDGTEVSAQISQSRACVKDGDAVRIGERDLQAGVLPPNC
Ga0207555_100724	Ga0207555_1007242	F028904	MNQPATEIETESPAFHCGVHEQMAMTRRAVAAVEDKDLKDAVHRTHWERRGLFGRLRQTPWVERSRLKSSS
Ga0207555_100786	Ga0207555_1007862	F033981	MGGKREPDDREKAVRAEEQKAALRRRREIFDALMKVLRGG
Ga0207555_100997	Ga0207555_1009971	F090936	VRVLDIATGSELAWLDVTTATPSVAWLAYSGSWVGDHIVASASSGLAVLHVGSSTLELEQVLSLDHSQFPVGVQEPRFVDAAGNEIAAAADIPPAKSSGGFSFLLLCDRIARTCARGEPAPAREWL
Ga0207555_101048	Ga0207555_1010481	F034758	MWYRDENGQQWAEIIDFLTMYPDGRRYVVRLIGEIEADRS
Ga0207555_101050	Ga0207555_1010501	F004992	MSNETPAAIDPDMFAAVFSQNWDNARYIKSERISFMNAYSVICAGVLALLQSVQASDLIRIALLFFMTLFSLVGLLTSLRLKSELEECLAKIEAMTVQAKVSQFIALGQLEGKPSRYPRFRWIFPIFYTM
Ga0207555_101265	Ga0207555_1012652	F080469	MIFTNKLLPVALIAALVGGSVGALVMHKSQPAEAETT
Ga0207555_101500	Ga0207555_1015002	F000556	MSTEPQLAFYQRLPEPPGLEIRVNFGIFAGRPATAAEIDELAQSLLTKVGEISIVAEDRHEIGEDSEASLHQVRIDVDPEYIPEDEHEADVLAGRIVEAAESWARD
Ga0207555_101550	Ga0207555_1015501	F001033	ERPDSTAGTSNAGTRKLFIDPSSTSVALRGKASLIVSPLTHRDGNYVGDYNLKVRPYFFKSEKGSLLLAASDDAVRKLQTGTAINFTGKAVTHKDGRTHIVLGRATPSSGNRGGVTFSIITDDAKIVFNTSYHFGT
Ga0207555_101551	Ga0207555_1015511	F064590	MDERSGTIRLVEPAQDSEARGLAATVSRTDVEQAMRSEGSVDLLLDVERVTSDGGGRETQRIALGWEPQDLEQLLKTTDGDEISLTFDKGELERLLDEDVEAHGMRETLA
Ga0207555_101745	Ga0207555_1017451	F016215	VSVINRRNAIMGWAVWNVAKRAGKKKARDVTPSVEGGKPNTSLIAVFLAAAAGAFAFLRGRRSSTD
Ga0207555_101866	Ga0207555_1018661	F018513	MDAPASEKRLEQLREKAWQEGVVPGRGVDVIGGPIPRKPGYYGEPVVKPPV
Ga0207555_101904	Ga0207555_1019041	F000707	KLPLNGTIQHPDLAEALRGENGTFFCQQGGQGYIVTAAEGFSIKSLRPVGRKIMEANVPVHVAPEPWAITKISEDVLEFSSVPQSPRQQRAA
Ga0207555_102000	Ga0207555_1020002	F008954	MKKTRLLPLLCALTAIAWSLPGLAQAKASKAPYPQKASSMFDGGSAFDGGSAFDGGSAFDGGSAFDGH
Ga0207555_102231	Ga0207555_1022311	F047128	MRKCILISMALLAFAASAFMASAASAGANKGPLIIAMKDPGCHWFYVGGGPNHRQYTKSVTRVGPVTLLNLDEAAMVIKGPGGTKIEKVGAKLTLKTKGVY