3300026937: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3-12 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026937
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0055682 | Ga0207466
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3-12 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 20532918
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.2958
  • Long. (^o): -89.3799
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004397	Metagenome / Metatranscriptome	440	Y
F015863	Metagenome / Metatranscriptome	251	Y
F022740	Metagenome / Metatranscriptome	213	Y
F037925	Metagenome / Metatranscriptome	167	N
F048397	Metagenome / Metatranscriptome	148	N
F085355	Metagenome / Metatranscriptome	111	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207466_100348	Not Available	1075
Ga0207466_100364	All Organisms → cellular organisms → Bacteria	1068
Ga0207466_100937	Not Available	817
Ga0207466_101487	All Organisms → cellular organisms → Archaea	700
Ga0207466_102186	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	621
Ga0207466_102538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	591

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207466_100348	Ga0207466_1003482	F015863	MRRFIPLLILLGLVFGASYASALINRVMGPWSSTAIHQDGSLSHMQFGVDLPRPEWVPVYPGAWVVGGSKITSVEHPAGFHGLDLGTRASLDEVKRFYTEQLTAEGFEVSDLGLMGLNPPTAALLGIDGMLSAKRPSTDDTIDVQIRTPDGIIPSRLLQIHWRKISATPG
Ga0207466_100364	Ga0207466_1003641	F022740	ENTVIFVDKAAGAGSRNVGFYHRRRAQILAARSNELGGLVSFISVGGQPVNTTRNGTIVAAFTFDDIVWTDIQQKTFAAATAQIRQIRPGSTPVLAATGTITPLADTEIKKLGWKIVQLKPDR
Ga0207466_100937	Ga0207466_1009371	F004397	SGGKAAMSEFDLKVALIIFVTKFIDPFAAVPALVAGYFCRTWWQVVIAAAAVGIFVEMILVLFEPTPGVHQGRLLMAVLAAGVWSNLAFAFKTWRAKRA
Ga0207466_101487	Ga0207466_1014871	F037925	MKIIAWCYNCQQQISFNNVSRNRNGVATPVDDHGNLHSCKHKNRKLGFQSQKCFRCGQGIHFDKNCRSISGKYIPLDWNLGKRHDCNKTPDLEV
Ga0207466_102186	Ga0207466_1021861	F048397	VHNSTIFRAILEKNKCDKCNLTIHPNFIGNHKCDHQNCPICKNPITPSQYWPHIRSHPGHENDSPPLPKRNMFENRKN
Ga0207466_102538	Ga0207466_1025382	F085355	MDSLRAALTWIKDLLNWLPEPVVALLILGIAVLLALALHRWAS