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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026846 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0099864 | Gp0111026 | Ga0208273 |
| Sample Name | Soil and rhizosphere microbial communities from Laval, Canada - mgHMA (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 30503168 |
| Sequencing Scaffolds | 16 |
| Novel Protein Genes | 18 |
| Associated Families | 18 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 11 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → rhizosphere → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Laval, Canada | |||||||
| Coordinates | Lat. (o) | 45.54 | Long. (o) | -73.72 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000708 | Metagenome / Metatranscriptome | 926 | Y |
| F001755 | Metagenome / Metatranscriptome | 641 | Y |
| F003142 | Metagenome / Metatranscriptome | 505 | Y |
| F003412 | Metagenome / Metatranscriptome | 488 | Y |
| F006093 | Metagenome / Metatranscriptome | 382 | Y |
| F006169 | Metagenome / Metatranscriptome | 380 | Y |
| F007661 | Metagenome / Metatranscriptome | 347 | Y |
| F011790 | Metagenome / Metatranscriptome | 287 | Y |
| F016834 | Metagenome / Metatranscriptome | 244 | Y |
| F025817 | Metagenome / Metatranscriptome | 200 | Y |
| F027955 | Metagenome / Metatranscriptome | 193 | N |
| F036318 | Metagenome / Metatranscriptome | 170 | Y |
| F044758 | Metagenome / Metatranscriptome | 154 | N |
| F062895 | Metagenome / Metatranscriptome | 130 | Y |
| F073608 | Metagenome / Metatranscriptome | 120 | N |
| F074665 | Metagenome / Metatranscriptome | 119 | Y |
| F087414 | Metagenome / Metatranscriptome | 110 | N |
| F102897 | Metagenome / Metatranscriptome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0208273_100031 | Not Available | 1947 | Open in IMG/M |
| Ga0208273_100058 | Not Available | 1749 | Open in IMG/M |
| Ga0208273_100273 | All Organisms → Viruses → Predicted Viral | 1199 | Open in IMG/M |
| Ga0208273_100618 | Not Available | 949 | Open in IMG/M |
| Ga0208273_101832 | Not Available | 677 | Open in IMG/M |
| Ga0208273_102082 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium | 651 | Open in IMG/M |
| Ga0208273_102523 | Not Available | 612 | Open in IMG/M |
| Ga0208273_102585 | Not Available | 608 | Open in IMG/M |
| Ga0208273_102604 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 606 | Open in IMG/M |
| Ga0208273_102895 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 587 | Open in IMG/M |
| Ga0208273_102906 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 586 | Open in IMG/M |
| Ga0208273_103053 | Not Available | 578 | Open in IMG/M |
| Ga0208273_103088 | Not Available | 575 | Open in IMG/M |
| Ga0208273_103946 | Not Available | 532 | Open in IMG/M |
| Ga0208273_104494 | Not Available | 512 | Open in IMG/M |
| Ga0208273_104646 | Not Available | 507 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0208273_100031 | Ga0208273_1000311 | F003142 | MNHHDLITIQQITNLVERGKSREEIAELIEVTIDSLQVTCSRLGISLRRPRLDNGIRLLPRGKPVPSDGRTTPDLSCDVSVPLQPIAERRQDSQPGPEQTQYTTPHQAGSKAKEMDFANLALTMRYKGEERTTELALTQLAIGQLALEAGLRDMSIGELVGELLTATIQ |
| Ga0208273_100031 | Ga0208273_1000312 | F006093 | MQPTNLNLKVIARDATLRGDTKTLFHALDLLERVVPIATFMDFCTELDELRLQGARPRPH |
| Ga0208273_100058 | Ga0208273_1000581 | F000708 | VQGAISTLNGMNKPAPTLAQIAARFKRHDVEWSRGAYMIIDRRTANPIARLRPIPDTDRFELFYWSNVKGRWTTFGNLGRMKLM |
| Ga0208273_100273 | Ga0208273_1002732 | F062895 | MPDLPLANGLVIDTTTGQAIVPTTSPDAVIQQQTARTRQSAEAATVRGRDRNNRPVRRNLIDLPADTKAVTTAGVVWLYFTLGINDAEIAEATGLKLSQVDMIKGLQLFTQLDILLKENIAALQADDVQQRIERMSAKALDGLEDIVADEETRPATKARVYMNMLDRGGYSPKQMIEHKYSLEGGLVIRHIREIAQPKHMPTIDVTPLKDKSNGNRSE |
| Ga0208273_100618 | Ga0208273_1006181 | F102897 | REMNLGAWREITDVYGGKITKATYRRSGRMVTVRTSFGSKTAQMSGNTPDSLAKTLLRELVEKRN |
| Ga0208273_101832 | Ga0208273_1018321 | F027955 | DEIGEHAWIISIVGDFLILFGAYWTARAVLLAPEQAAGIAVGRWDNEPLKNALLKQSSDARIGLMCVAVGAGFQIVSKLIEEFFS |
| Ga0208273_102082 | Ga0208273_1020822 | F074665 | RVTSVGLRLAEDDTPPATISGRIKKVARDLWKRFG |
| Ga0208273_102523 | Ga0208273_1025231 | F011790 | MATRRVSSRHHWFMRDIPRTNILLIWLAFGAAVLIYSIDWHPSGWSALKKETAAKPSPRNDAAYYTGSIIIVPTRGDQCWRRMLDNRTGKMWDQGYVNCDEAVAPLEKDQRVGMSSLRMNAIGKAFNHAHDE |
| Ga0208273_102585 | Ga0208273_1025852 | F087414 | MLAAVAAVVAFAPKVSHGVNTPAQEAVDAPVTAAPPHDGRKDR |
| Ga0208273_102604 | Ga0208273_1026041 | F036318 | PVALFFGSVGVSAQAPHPKAAVLGANFLLSREAEQFLTRRGRMPTRTDVPVNPAHVSERLKERKIIATIFAGEEQKKWQGLFKEIFKPR |
| Ga0208273_102895 | Ga0208273_1028951 | F044758 | ANPGGEKTDDYGWIVQAMAECDVAAKHKLDTLHFLIIPVTSTAVSLPGWSPRAIGEIGDAATLLHSSDTVIGLRNRALALYQKPLIFAVSDPTSKTVYKWKPSVGVAPLTTRDTDQPALTLGFEIPDTGKPIAWGPTINLTKGTCYWINPLILAAPRSG |
| Ga0208273_102906 | Ga0208273_1029061 | F016834 | LSPYSMLAGMGSMYFPNLPWLNPGALALALPLDDQTKNIVSYAIYAAELAVSIVVLARVIGFSWLMATAAAQLYLYLLFPPFSEVFRIYGWYSLAPYYAHLQAVLNGAAAVLLVCGRLRDWRGNAILAAGFVALFISGLLSAPFTFVFATPAYIAICAALVLTRRPSRVEWAWKISALALCVLFFFASGLLDYY |
| Ga0208273_103053 | Ga0208273_1030531 | F025817 | MNEQAVQERRGPGLNIGEVAFYSVLVLVVMLLSVYVP |
| Ga0208273_103088 | Ga0208273_1030882 | F003412 | MSKAIPKECMALLKEASDMFSETGCVPGIDGEEVPAETIVQNAKDYISETIDDPEAIYDPEIWDTSGFALVLSWL |
| Ga0208273_103658 | Ga0208273_1036581 | F007661 | MKQFKLSSKRKSSGQVVVLLIIVLALLGGAWWWLNSNKENAAREGTAFARDAAQKIAVQHDINFFNSRLSPQARTNFPASTQQEFMNEI |
| Ga0208273_103946 | Ga0208273_1039461 | F006169 | MSKIALALAFALAVTYAVPASAAPTTCAHSTMQYDSSGTWTGPYCD |
| Ga0208273_104494 | Ga0208273_1044941 | F073608 | MRALVVAASLLVPVPACALEIGARLPTRYGEVIVVKNDGGVKNLTTYFPYGSICHTDLDLKTWLIVKRIVGEQTLLVVDFGVEITRLSCPHETETNMRYAQARKRYEDYVRALDDKFFSDLNGG |
| Ga0208273_104646 | Ga0208273_1046461 | F001755 | MALKLRPTGLGSGIDKDRPDYTVVTGEWEVGRVYETRGGPDNLRWFWSMNANGPMTRSDRVATLEKAKAQFQKSWDAWKAWAKLEEVP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |