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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026826 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0095510 | Gp0055860 | Ga0207517 |
| Sample Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2-10 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 33798355 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 10 |
| Associated Families | 10 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 5 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → agricultural field → agricultural soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Wisconsin, United States | |||||||
| Coordinates | Lat. (o) | 43.2958 | Long. (o) | -89.3799 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000569 | Metagenome / Metatranscriptome | 1018 | Y |
| F014308 | Metagenome / Metatranscriptome | 264 | Y |
| F019867 | Metagenome | 227 | Y |
| F025757 | Metagenome | 200 | N |
| F028161 | Metagenome / Metatranscriptome | 192 | N |
| F058486 | Metagenome / Metatranscriptome | 135 | Y |
| F070538 | Metagenome | 123 | N |
| F082749 | Metagenome / Metatranscriptome | 113 | Y |
| F085779 | Metagenome / Metatranscriptome | 111 | N |
| F097305 | Metagenome / Metatranscriptome | 104 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207517_1000072 | Not Available | 1263 | Open in IMG/M |
| Ga0207517_1000116 | Not Available | 1151 | Open in IMG/M |
| Ga0207517_1000178 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 1070 | Open in IMG/M |
| Ga0207517_1000635 | All Organisms → cellular organisms → Bacteria | 806 | Open in IMG/M |
| Ga0207517_1000778 | All Organisms → cellular organisms → Bacteria | 767 | Open in IMG/M |
| Ga0207517_1002459 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 602 | Open in IMG/M |
| Ga0207517_1002738 | Not Available | 588 | Open in IMG/M |
| Ga0207517_1003171 | Not Available | 568 | Open in IMG/M |
| Ga0207517_1004275 | Not Available | 530 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207517_1000072 | Ga0207517_10000722 | F014308 | MSGSTIGIQLIMPKTGTSPKATPEQQASEREAATQPVVKAPPPPGMG |
| Ga0207517_1000116 | Ga0207517_10001162 | F070538 | GSDVQYTNPFTGGVLLFTSGGFPPDRSIHYADAHADAGLALAIGGGFDIRLSKRIGLRTAMDYDPTFLVRPVFPDLTPDAQGQVHLQPAPNERQRQDHVRLSIGMVWHIR |
| Ga0207517_1000178 | Ga0207517_10001782 | F019867 | MHRHVTGFSAATILVVATASPLHAQGIEVFGGYSVTADYVQNRPAILVVDQKVSPFFSLGSGPTGFEASFKHDVRNGLGIKVDVSGYSDTFPPGPAAYCQPDGSTAGIACGTGLTFQATGRALYVTAGPEWKIRRGKRFAPFAQTLVGIVYTRSTFMMNGS |
| Ga0207517_1000635 | Ga0207517_10006352 | F028161 | LLAAQVIQAAQAQDNKNIREDDYVRKVPLEDFKVPIVPIIPPGSSLDLRPGRTPDSADRVYNSTPFARDPTTPSIGLSIKSPFDDRK |
| Ga0207517_1000778 | Ga0207517_10007781 | F000569 | DSEAGQPYRAQFWRPVVPKSVSQKRPSMDLHIKKVWLPGAASCLLFFGFYYVLIWLPFDKNRFQFLAIPYLVLPFVGALAAYWSRRMKGSVLERIVSALFPVFAFVALFAVRIVYGLFFEGKPYTLSHFLAGFSVTLVFIVVGGLLLVLGAWPFCRPHLGEQLP |
| Ga0207517_1002459 | Ga0207517_10024591 | F058486 | AMVIKGPGGTKIEKVGAKLTLKTKGVYHLTMVKQAPDDNHLVLKIT |
| Ga0207517_1002738 | Ga0207517_10027381 | F097305 | MENEKSGKDKKSDSRSQRLAAELRENLRRRKAQVRGRKAPEAGEGTKRPGLPPRGG |
| Ga0207517_1003086 | Ga0207517_10030862 | F082749 | FAANATGEGRLAPAFARRGGMDGESVDAAGKLGRKRLINHAMTLDAGLSLKGVRHDIDPVVSLPARPVPGMALMLVRFINHFEVLRRESLGQLFCDEIGGSHIARLGERSLPVNGYKQVLKASPVKAHNVRS |
| Ga0207517_1003171 | Ga0207517_10031711 | F025757 | RPSPCPYLIENHRLCDIFRPHQTEEHPPFKAIESKARLKAWSFATRAPMSYSTSISLFWLEMAVLIGCVVLSIRMRSRAAMWVALAIVAHCAVWLAIHDEEILIRLVASALVYLGLLKFSPNAARVWLCAGGALAGAFLLGTMALSLLMSFPGRWSVFGLSMGATLLFLTSGLLIGFWVVYRWTDPTQL |
| Ga0207517_1004275 | Ga0207517_10042751 | F085779 | PRRPINPGLVPNTGQINTGAAPQPWSKSAEVDNIPAPAEAWAALVQPISRQPSAGGGATTTGTGGQQPPASGTINASSEPPPSGPIGSFGQTIPAKFSKRNDILDHLPTMAIPLPLTQEQRKQIYDAVMAEKSQPVVGADALELASELSPNQALNGMRPLPESVRSIDGVSRLYYI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |