3300026754: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01K3-12 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026754
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0091552 | Ga0207631
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01K3-12 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 20461439
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	2
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1
All Organisms → cellular organisms → Bacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002471	Metagenome / Metatranscriptome	556	Y
F009131	Metagenome / Metatranscriptome	322	Y
F037171	Metagenome / Metatranscriptome	168	N
F055927	Metagenome / Metatranscriptome	138	Y
F063479	Metagenome / Metatranscriptome	129	Y
F077375	Metagenome / Metatranscriptome	117	Y
F099765	Metagenome / Metatranscriptome	103	N
F103019	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207631_100003	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	3470
Ga0207631_100317	Not Available	823
Ga0207631_101203	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	621
Ga0207631_101529	Not Available	589
Ga0207631_102209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	542
Ga0207631_102790	All Organisms → cellular organisms → Bacteria	512
Ga0207631_102843	All Organisms → cellular organisms → Bacteria	510
Ga0207631_103051	Not Available	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207631_100003	Ga0207631_1000031	F037171	MYVCARIENDPVEEPEEFAGEAPEQQSVGGGKCPLTYLCPIHYLIHLPLYTFMPKD
Ga0207631_100025	Ga0207631_1000252	F103019	MLFFHHAGKTSSIPPPAGGLSAAIVVVARRWKEYHVVAAVEGHELKTPETEHRPGPERLLETAHLELDGKLFVSTQQAPTWRANCRRFETGGSLGPTSECRVPQPRWVERVGER
Ga0207631_100317	Ga0207631_1003171	F063479	MSERNWAETHWIARSTRGGGRPKSGEVDLGPPVKSGRVRGLGELHGLLAELAEAQVGLEGGWSGLATAAVALAAMAGGNTLAGAKERWLAGEGECGAKRGAPGEAL
Ga0207631_101203	Ga0207631_1012031	F002471	VNDDLNAKLEIASKSTSCVEIVETCNRCKDFDIDACNEHLVSISKLNDEVASLNVQLKTSKNEFDKLKFARDAYTIGRHPSIKDGLGFKREAKNLTSHKAPIPAKEKGKDPMATSAKKNHAFLYHDRRQTRNAYRNYNAYDDFDSHVMFASSSSYMHGRNMSRRNAIHHVPRKNIIHAPRKVVNEPSTIYCALNASFAICRKDRKI
Ga0207631_101529	Ga0207631_1015291	F099765	APGRSQRARRAGDAVMGPKPPLVGLSDHPRASRSIQQIKAWGGLLGFVVVAGYSYMGGMGVADALLRGVIAGVAAQMLAWIAAIVLWQHLLEGEAKAAVRRARENRNRAAQRGSQGTEA
Ga0207631_102209	Ga0207631_1022091	F037171	MYVCNRIENDPVEEPEELAGEAPEQQSVGGGKCPLTYLCPIHSLIHLPLYIFMPKV
Ga0207631_102790	Ga0207631_1027903	F077375	YGSAAMVGKIARGAYVLVVGTMVVAWVISVNKEAPAKPQQTGPQVSYMYS
Ga0207631_102843	Ga0207631_1028431	F055927	IEGVFEPHYTAGCSGHDEPELDPVSNLAGSAQDITWRFVLPSNGSFPVDAVGPTFWFGGTVNDPNSLFGQAFEELQFYPNALVSNCNPNGAFVVSNVPGDYTVCSPVWSLTTTGQKPNYHEPAAFNAMLTAGPTSAPLVMHAGDAVSVHYFITSAKDGWHITVSDATTG
Ga0207631_103051	Ga0207631_1030511	F009131	KCYVKSIECVKKIKSSFASVGAFSSEESFSRGNPEGPLEWISHEAEAFEEILSSRSDICAFSGARGIASVLEKKGCEHVKFLAQSEATLSSEDIKDPSAEASAVGGKFFTDIWNDGGRGMAREIIERSEKGIHDARRVADAAERSREPERQLGTN