3300026730: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A5-10 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026730
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072046 | Ga0207491
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A5-10 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 17719300
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000268	Metagenome / Metatranscriptome	1411	Y
F000412	Metagenome / Metatranscriptome	1169	Y
F007536	Metagenome / Metatranscriptome	349	Y
F066758	Metagenome / Metatranscriptome	126	Y
F084687	Metagenome / Metatranscriptome	112	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207491_100343	Not Available	701
Ga0207491_100643	All Organisms → cellular organisms → Bacteria	625
Ga0207491_101428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	527
Ga0207491_101582	Not Available	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207491_100087	Ga0207491_1000872	F084687	MKLVRYRSASSEKPGLILDGEIFDLSGSFAALNPRAPTLDDIEAIA
Ga0207491_100343	Ga0207491_1003431	F007536	MLNLHLRLIRSALGQKAGAKPMGLPHRERSQGRAAMHGHEVASLPGEMGPPLGQSHERASPFLAKFGLSASLTTGRDAAHAVSGAPMALVLPATTSCIQYVRFTDEVPRRLVPVGRVNPGYKSHTKSRGHASETGTAFPRPRLKGCQQRQSRGARLRLAEGACSERQNLRVLLGPLGFMGPVSPTNAATKWRDGTSSRQLAGLLSNSPQQPKPGQAAVRSR
Ga0207491_100643	Ga0207491_1006431	F000268	MRVVAVMLLLSAGIAAEAMSYSFVSKASGRLGGPIRFEFYRDSTTHPKTDIKSFTVSTRTADDRWKAMWSILSGRGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGSSGVTFGFDKNGKMIFPDSFDQ
Ga0207491_101428	Ga0207491_1014282	F066758	GPKRFKVYGQMDLDLMREVAPIVAMRTYNNRYLFSDRVDPKHLVYQGIYQDWSIPALALK
Ga0207491_101582	Ga0207491_1015821	F000412	IPSTCSLKAITHATGSKIGSSRSRWNRGTEYYPVGMITHIEYPDIFFXKYNNPYHIEMGTYVLIDLLXAGGSVAPAQPTSLRXNXGIFAQTCSTCLDGPHRKDSSSAHPYRAIDRAXEPRIPSTCSLKAITHATGSKIRSSRSQIGIGAHNTTM