3300026714: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A1a-12 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026714
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072077 | Ga0207567
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A1a-12 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 16099465
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000268	Metagenome / Metatranscriptome	1411	Y
F001033	Metagenome / Metatranscriptome	799	Y
F007536	Metagenome / Metatranscriptome	349	Y
F009830	Metagenome / Metatranscriptome	312	Y
F017166	Metagenome / Metatranscriptome	242	Y
F019378	Metagenome	230	Y
F050608	Metagenome / Metatranscriptome	145	N
F064215	Metagenome / Metatranscriptome	129	Y
F083399	Metagenome	113	N
F097305	Metagenome / Metatranscriptome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0207567_100011	All Organisms → cellular organisms → Bacteria	2120
Ga0207567_100026	All Organisms → cellular organisms → Bacteria	1484
Ga0207567_100162	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	848
Ga0207567_100351	All Organisms → cellular organisms → Bacteria	726
Ga0207567_100525	All Organisms → cellular organisms → Bacteria → Acidobacteria	671
Ga0207567_100759	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	619
Ga0207567_101165	Not Available	561
Ga0207567_101250	Not Available	553
Ga0207567_101528	Not Available	531
Ga0207567_101821	Not Available	510

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0207567_100011	Ga0207567_1000112	F007536	VEELTCFVNMRLAMDMLNLHLRLIRSALGQKAGAKPMGLPHRERSQGRAAMHGHEVASLPGEMGPPLGQSHERASPFLAKFGLSASLTTGRDAAHAVSGAPMALVLPATTSCIQYVRFTDEVPRRLVPVGRVNPGYKSHTKSRGHASETGTAFPRPRLKGCQQRQSRGARLRLAEGACSERQNLRVLLGPLGFMGPVSPTNAATKWRDGTSSRQLAGLLSNSPQQPKPGQAAVRSR
Ga0207567_100026	Ga0207567_1000262	F001033	MCGHSLIARLTIAVFVFQMLGVISVVHAERPDSTAGTSRAGTRKLFIDPSSTSLALRGKASLIVSPLTHRDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQTGTAINFTGQAVTHKDGRTHIVLGRATPSSRDRGSVTFSIVTDDARIVFNTSYHFPAPRP
Ga0207567_100162	Ga0207567_1001621	F050608	MRLRIRTILCYTAIFSAVSFFTITFAETNPLSKAQVADQIRKVENGVDDFEKYLTSRGENAKD
Ga0207567_100351	Ga0207567_1003511	F000268	MLMRVVAVMLLLSAGIAAEAMSYSFVSKARGRLGGPIRFEFYRDSTTLPKTDIKSFTVSMRTADDRWKAMWSILSGRGLTHPIEYGVTPPGFTTMIQPQKLIPGRVYAGFATDGHGGSSGVTFGFDKNGRMTFPDSFDR
Ga0207567_100525	Ga0207567_1005251	F064215	MDDKLATDEARRSVQHETVKAQVEGEVQSEIADRASQGPPPGEAAKIDQVAGQFRSKAVNEVVDTEREVERGRG
Ga0207567_100759	Ga0207567_1007592	F009830	DERLARVVRIIVEQYDGDVKAFVESNRYRIEANRRTEAASDHGDEAALRKCPPTTKIIGRISRVHYS
Ga0207567_101165	Ga0207567_1011651	F083399	MVEESAVSGDARPWGFFATFVLGAIALLAGQLAGMAALVGWYDFDLRNVPVLSQHGGAIILFIFVSAPVQVAILALAAGYKGNIADYLGYKLPRRGEVVLCLAILAAMIAIGDAMSWLAGRSVVDRFQTDIYQAANSVGQLPLLLTA
Ga0207567_101250	Ga0207567_1012503	F019378	VQREMIATAAERIKPKEPVPPERVFDFSFIQKVRGSVR
Ga0207567_101528	Ga0207567_1015281	F097305	AMENEKSGKDRKPDSRSQRLAAELRENLRRRKAQVRGRKAPAAGEGTKRPGLPPRGG
Ga0207567_101821	Ga0207567_1018212	F017166	MVFTGWLYLGEKDAVRSTKADVAAAADRTAVALSQSADPERNTDADAEDVFKKHVPTPSALEDLVVKQSVESISAGRLRQSVKISARARTTLSEFFSMQGAEIEITATHDFDRKK